PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g042890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HB-other
Protein Properties Length: 1119aa    MW: 126628 Da    PI: 7.8089
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g042890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.19.5e-11548851
                    -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHH CS
        Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNr 51
                    ++ q+++Le+++ +++yp+ +e+e++ k+lgLt +qV+ WF+ r
  Csa11g042890.1  5 SPVQVQALEAFYFEQMYPTPKEMEDMGKSLGLTVKQVSGWFKRR 48
                    788**************************************844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.592148IPR001356Homeobox domain
SMARTSM003891.2E-5159IPR001356Homeobox domain
SuperFamilySSF466898.13E-9348IPR009057Homeodomain-like
CDDcd000865.62E-10350No hitNo description
Gene3DG3DSA:1.10.10.603.5E-10446IPR009057Homeodomain-like
PfamPF000462.9E-8548IPR001356Homeobox domain
PROSITE profilePS5082712.501351410IPR018501DDT domain
SMARTSM005711.1E-10351410IPR018501DDT domain
PfamPF027912.8E-9352405IPR018501DDT domain
PfamPF156121.0E-7631671IPR028942WHIM1 domain
PfamPF156134.0E-11754827IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MKRKSPVQVQ ALEAFYFEQM YPTPKEMEDM GKSLGLTVKQ VSGWFKRRSR GKGVISPADD  60
VVGGGNPQSY NTSRIRSSMS SRCDFRAGVK KRCSVETRKA NCQELFTSQH ILAKIFRKDG  120
PPLGSEFDHL SSGARKASWL GTSSVEQQKQ RMTRKRKISE LMDHTSQDCV QENATVMKHG  180
IGKGLMTVWR VMNPNRRDVS PCVGLLDERA TLPQSSARNP PHQKKKQSQL ASILKQKLLQ  240
KRSTEKKRRS INREVELNKD ETQREFKDNC ELAVDREVFK ETCQTTSILV DDEELEMRER  300
QERGNPLTCS CHHSSSGAHG CFLCKDLLPK FPPNSVQMRV PFGLHPWNSF PETVKKLFKV  360
VHFLYTYSVT LDICPFTLDE FTRAFHDKDS LLLGKIHLSL LKLLLLDVET ELQRGYFSNL  420
SISCKFLALL QSVESQILIL DLWKDSLNSL TWTEILRQIL VAAGYGSVKG AVQSEELSKE  480
RRLMKNYGLH LGTLKGELFR MLNKQGNNGL KISELANAPE VAVLNLATAQ EERENSICST  540
LASDITLFEK ISESTYRVRV NCFSEDLDKS QSDSDASGSV DDESDTCSVS SGDDIEHVSE  600
NSALRKVKCR KRRKHKSKMR ELCSEIDESH PGEPWLLGLM EGEYSDLSIE EKLDVFVALI  660
DLLSSGSTIR MEDLPRAMVD CVPSIYSHGS GGKIKRSSSN QYSYPRGSWV HGGELPGIKA  720
LSKSSDSHPV DSSSVVGDFA NLAGDNANNV HPMQSVYLGS DRRFNRYWLF LGTCNANDPG  780
HRCVFFESSE DGHWEVINNK EALRALLSVL DDRGRREARL VESLEKRESF LCQAMLSGQV  840
TQSERSHFTD IVREDSSSPV SDIDNNLCLS EIANDQFSSQ HAAIVFEIGS KREKSLLWSL  900
LQEFDEWIWA NFNFNLNAVK HRRRSYLDSL TRCKSCHDLY WRDEKHCKIC HATFEVDIDV  960
EERYAIHAAT CSKKEECDTF PDHKVLSSQL QSLKAAVYAI ESAMPEDALI GAWRKSAHRL  1020
WAKRLRRSST VSEITQVIGD FVGAINEDWL WHSSDQGHSN ALLGETISCY PSMPQTTSAM  1080
ALWLVKLDTL IAAYVEKAQP ERNQLLCRTR NTSRRASRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g042890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496400.0AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBankAL1615340.0AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445475.10.0PREDICTED: homeobox-DDT domain protein RLT3-like, partial
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLR0GUF40.0R0GUF4_9BRAS; Uncharacterized protein
STRINGXP_010445475.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96382125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator