PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa11g041570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30912.8 Da PI: 9.6755 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.6e-19 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+ +G g+W+++ar g++R +k+c++rw +yl Csa11g041570.1 20 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 67 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++d+++++G++ W+tIar ++ gRt++++k++w+++ Csa11g041570.1 73 RGQITPHEESIILDLHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.516 | 15 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-30 | 19 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-17 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-24 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.28E-12 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 19.631 | 72 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-14 | 73 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.39E-10 | 77 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 269 aa Download sequence Send to blast |
MSWWGVKGGG WGMVEEVWRK GPWTAEEDRL LIEYVRVHGE GRWNSVARLA GLKRNGKSCR 60 LRWVNYLRPD LKRGQITPHE ESIILDLHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK 120 KSKPATNNEE KTKSRLLKRQ QFKQQRELEL QQEQQLFQFD QLDMKKIIAL LEDNNSSSSS 180 DGGSNVFYAS KPFGYNNPNS LEEQYLQGRF APVNIPDANT MNEDNAIWDG FWNMDGVDGH 240 GGNLSSVAAT AVCGPRKPYF HNLVIPFC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-26 | 20 | 121 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa11g041570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY133705 | 0.0 | AY133705.1 Arabidopsis thaliana clone C103160 putative myb protein (At4g13480) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010440572.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | R0GP77 | 1e-165 | R0GP77_9BRAS; Uncharacterized protein | ||||
STRING | XP_010440572.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-129 | myb domain protein 79 |