PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g041370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 325aa MW: 37244.7 Da PI: 7.4989 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.5 | 4.9e-15 | 9 | 49 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +en+ r + + +R++g+lKK +ELS+LCd+ v++iif ++ Csa11g041370.1 9 VENDKARAIILKRRKEGLLKKVKELSILCDIWVCLIIFCPN 49 69999*********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-15 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-6 | 1 | 21 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.334 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.34E-24 | 3 | 83 | No hit | No description |
SuperFamily | SSF55455 | 1.31E-17 | 3 | 91 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-13 | 9 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-6 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-6 | 36 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAKLKLAWVE NDKARAIILK RRKEGLLKKV KELSILCDIW VCLIIFCPNE AEPVVWPSAE 60 RARGLVNDFF ALPKFVQKKK ETDVESFLKE KTNAVRKQLM KSSKKTKEYV TDELMLRLQH 120 GRGIEDLNLS EIYALLSYSK EKIILCRKNS DFMQFSPLRD PPVLPFEVQA KQLTITTNDF 180 FVGGGQDDDK AEFDPQPLEH VSYCPYQGSS SNGNASLEME PIYPSVMRFH GLVGSASQQL 240 QHLNINNNPI MAMNQPKQYL FDFMSHKQEI EEGKNNINTH IYRANNTKTT KNDVRQEPPP 300 SETTGREDNV NMMSLDIDRD WLSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g041370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445462.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL92 | ||||
TrEMBL | R0HWZ5 | 1e-131 | R0HWZ5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010445462.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4724 | 14 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 1e-111 | AGAMOUS-like 48 |