PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa11g035510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 798aa MW: 91672 Da PI: 7.0055 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88.9 | 7.3e-28 | 65 | 152 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ + +++r+++ ++t+Cka+++vk++ dgkw ++++ ++HnHel p Csa11g035510.1 65 FYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPETEGS--SSSRRSSIKKTDCKASMHVKRRPDGKWFIHEFIKDHNHELLP 152 9***************************************999888..8999999********************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-25 | 65 | 152 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.7E-25 | 273 | 365 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.864 | 553 | 589 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.4E-7 | 553 | 588 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.3E-7 | 564 | 591 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 798 aa Download sequence Send to blast |
MMDLQENLVS DHAGDEFMVD SSSSRDVGIA DDLKAGGDLG FSGDVQDHEP RNGINFESND 60 AAYLFYQEYA KSMGFTTSIK NSRRSKKTKE FIDAKFACSR YGVTPETEGS SSSRRSSIKK 120 TDCKASMHVK RRPDGKWFIH EFIKDHNHEL LPALAYHFRI QRNVKLAEKN NIDILHAVSE 180 RTRKMYVEMS RQSGGYKNIG PLLQSDVNNQ VDKGRYLALE AGDSQVLLEY FKRIKKENPK 240 FFYAIDLNGE QRLRNLFWAD AKSRDDYLSF NDVVSFDTTY VKFNDKLPLA LFIGVNHHSQ 300 PMLLGCALVA DESKETFVWL IKSWLRAMGG RAPNAILTDQ DKFLMAAVSE LLPNTRHCFA 360 LWHVIEKIPE YFSLVMKRHE NFLQKFNECI FRSWTDDEFD MRWWKMVSQF GLENDEWLLW 420 LHEHRQKWVP TFMSGVFLAG MSTSQRSESV NAFFDKYVHK KITLKEFLRQ YGAILQNRYE 480 EESVADFDTC HKQPALKSPS PWEKQMATTY THTIFKKFQV EVLGVVACHP RKEKEDDNMA 540 TFRVQDCEKE DEFLVTWSKS KLELCCFCRM FEYKGYLCRH ALMILQMCGF ASIPPGYILK 600 RWTKDAKSGV LAGEGADQIQ TRVQRYNDLC SRAIELSEEG CVSEENYNIV LRTLVETLKS 660 CVDLNNARNS ITESSSQLNN GAHEEENQEM SGVKATKKKS VCRKRKGPQE ADQMLESQQS 720 LQPMESISSE GMGMNGYYGP QQNGQGLLNL MEPPHEGYYV NQRTIQGLGQ LNSIAPVQDS 780 FFANQQAMPG LVHYRIL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa11g035510.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF159587 | 0.0 | AF159587.1 Arabidopsis thaliana far-red impaired response protein (FAR1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010440343.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A178UY59 | 0.0 | A0A178UY59_ARATH; FAR1 | ||||
STRING | XP_010440343.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |