PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g033580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 361aa    MW: 41015.8 Da    PI: 4.7435
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g033580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.77.1e-0934631443
                    HHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsst 43
                    skRr++++ KA  L++L +a++av + s+ 
  Csa11g033580.1 34 SKRRQTLFSKAADLCILSGANIAVFVTSPA 63
                    8**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-41472IPR002100Transcription factor, MADS-box
CDDcd002662.18E-143097No hitNo description
PfamPF003197.6E-83464IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-934106IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.50.6202.5E-6249288IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
EYHALKHDGP LDHIKIKGSD YGLGGDSPLR ERASKRRQTL FSKAADLCIL SGANIAVFVT  60
SPADNSDVVY SFSGYYPASE IADCYLNGKS PRKITNPQTK LGFWWEDPDL YRNCDDISEL  120
NVIEDRMMRT RKHLMDCLEK KEKSQFVSSS DHQNPSSSSL DENPKSSTPS SCDEFASFEQ  180
NSTFSSLEKI CGEPSSQANC YYDQNHTFAI EDLYCDSLSG YLLKQDDGFV ESLWETEKQS  240
DIMSIFQEPD KTCLVLVATG SFNPPTFMHL RIFGYEKKEE HNLKGFWMFI MLNQIVDAAT  300
VCSSHEEGET AAYEESFQRF FEAKKKLHEG DELAAVDSHE LVWTLLLVPF KFEPKRQRCF  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g033580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440162.11e-153PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLD7LME13e-88D7LME1_ARALL; Uncharacterized protein
STRINGXP_010440162.11e-152(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48150.11e-68M-type_MADS family protein