PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g033550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 476aa    MW: 52997.6 Da    PI: 6.4348
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g033550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12328374455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  Csa11g033550.1 328 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 374
                     799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-4156234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.234324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-17324390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.63E-14327378No hitNo description
PfamPF000104.3E-10328374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16328390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MNVSGEMGQK FWENPEDRAM VESTIGSEAC DFFISSASAS NTALTKLVSP PSDSNLQQGL  60
RHVVEGSDWD YALFWLASNV NSSDGCVLIW GDGHCRVKKG VSSGEDYSQQ DETKRRVLRK  120
LHLSFVGSDE DHRLAKSGSL LTDLDMFYLA SLYFSFRCDS NKYGPAGTYV SGKPLWAADL  180
PSCLSYYRVR SFLARSAGFQ TVLSVPVNCG VVELGSLRNI PEDKSVIEMV KSVFGGSDFV  240
QGKEAPKIFG RQLSLGGSKP RSMSINFSPK TEDDTGFSLE SFEVQAIGGS NQVYPYEQGK  300
DETLYLTDEQ KPRKRGRKPA NGREEALNHV EAERQRREKL NQRFYALRAV VPNISKMDKA  360
SLLADAITYI TDMQKKIRVY ETEQQIMKRR ESNQITPAEV DYQQRHDDAV VRLSCPLETH  420
PVSKVIQTLR ENEVTPHDSN VAVTEEGVVH TFTLRPQGGC TAEQLKDRLL ASLAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-25322384264Transcription factor MYC2
5gnj_B2e-25322384264Transcription factor MYC2
5gnj_E2e-25322384264Transcription factor MYC2
5gnj_F2e-25322384264Transcription factor MYC2
5gnj_G2e-25322384264Transcription factor MYC2
5gnj_I2e-25322384264Transcription factor MYC2
5gnj_M2e-25322384264Transcription factor MYC2
5gnj_N2e-25322384264Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g033550.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615440.0AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973410.0Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440156.10.0PREDICTED: transcription factor bHLH3-like isoform X1
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLR0GXH80.0R0GXH8_9BRAS; Uncharacterized protein
STRINGXP_010440156.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]