PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g033540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 214aa    MW: 24331.3 Da    PI: 6.371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g033540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-1366112455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  Csa11g033540.1  66 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 112
                     799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.23462111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-1862128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.60E-1365116No hitNo description
Gene3DG3DSA:4.10.280.103.7E-1766128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1066112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1468117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSINFSPKTE DDTGFSLESF EVQAIGGSNQ VYPYEQGKDE TLYLTDEQKP RKRGRKPANG  60
REEALNHVEA ERQRREKLNQ RFYALRAVVP NISKMDKASL LADAITYITD MQKKIRVYET  120
EQQIMKRRES NQITPAEVDY QQRHDDAVVR LSCPLETHPV SKVIQTLREN EVTPHDSNVA  180
VTEEGVVHTF TLRPQGGCTA EQLKDRLLAS LAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-2760122264Transcription factor MYC2
5gnj_B2e-2760122264Transcription factor MYC2
5gnj_E2e-2760122264Transcription factor MYC2
5gnj_F2e-2760122264Transcription factor MYC2
5gnj_G2e-2760122264Transcription factor MYC2
5gnj_I2e-2760122264Transcription factor MYC2
5gnj_M2e-2760122264Transcription factor MYC2
5gnj_N2e-2760122264Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g033540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615440.0AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankAY0576260.0AY057626.1 Arabidopsis thaliana AT4g16430/dl4240w mRNA, complete cds.
GenBankBT0023010.0BT002301.1 Arabidopsis thaliana At4g16430/dl4240w mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973410.0Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440156.11e-155PREDICTED: transcription factor bHLH3-like isoform X1
RefseqXP_010451453.21e-156PREDICTED: transcription factor bHLH3-like
SwissprotO234871e-152BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A178V6531e-149A0A178V653_ARATH; JAM3
STRINGXP_010440156.11e-155(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-154bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]