PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g032920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 324aa MW: 36231.9 Da PI: 10.1967 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.3e-19 | 164 | 218 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+ +++++ ++++ LAk+lgL rqV vWFqNrRa+ k Csa11g032920.1 164 RKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTK 218 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124 | 7.1e-40 | 164 | 253 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEe+F+ +++L+p++K++la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr +l Csa11g032920.1 164 RKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELR-AL 253 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 8.0E-29 | 36 | 142 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 3.6E-18 | 133 | 221 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.427 | 160 | 220 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-18 | 162 | 229 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.2E-16 | 162 | 224 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.5E-17 | 164 | 218 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.42E-14 | 164 | 221 | No hit | No description |
PRINTS | PR00031 | 1.4E-5 | 191 | 200 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 195 | 218 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 200 | 216 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.9E-11 | 220 | 254 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 3.8E-26 | 220 | 263 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
PIHLSLSLSL KRKKSRKLYC KNRVFLVVVL EKKKMMLEKD DLGLSLGLNY QKKQMNLNSN 60 PSVVSVTPSS SSFGLPRRSS WNESFTSSVP NSDSSQKETR TFIRGIDVNR PPSTAEYGDE 120 DAGVSSPNST VSSSTGKRSE REEDTDPQGS RGGISDDEDG DNSRKKLRLS KDQSAILEET 180 FKDHSTLNPK QKQALAKQLG LRARQVEVWF QNRRARTKLK QTEVDCEFLR RCCENLTEEN 240 RRLQKEVTEL RALKLSPQFY MHMSPPTTLT MCPSCEHVSV PPPPQPPQAA TSAHHRGSLP 300 VNAWAPAARI SHGLTFDALR PRS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 168 | SRKKLRL |
2 | 212 | 220 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g032920.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF375453 | 0.0 | AF375453.1 Arabidopsis thaliana AT4g16780/dl4415w mRNA, complete cds. | |||
GenBank | ATHHOMEOA | 0.0 | M90394.1 Arabidopsis thaliana heomeobox protein (HAT4) mRNA, complete cds. | |||
GenBank | X68145 | 0.0 | X68145.1 A.thaliana Athb-2 mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010440099.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT4 | ||||
Swissprot | Q05466 | 1e-180 | HAT4_ARATH; Homeobox-leucine zipper protein HAT4 | ||||
TrEMBL | R0GXM3 | 0.0 | R0GXM3_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010440099.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1563 | 26 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 1e-167 | homeobox protein 2 |