PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g031260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 285aa MW: 31647.6 Da PI: 8.737 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.8e-19 | 136 | 190 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ +++ LAkklgLt rqV vWFqNrRa+ k Csa11g031260.1 136 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 190 677889***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.8 | 1.7e-39 | 136 | 225 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rLeke +eLr +l Csa11g031260.1 136 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELR-AL 225 69*************************************************************************************9.54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 6.9E-28 | 3 | 98 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 117 | 190 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.68E-19 | 120 | 193 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 132 | 192 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-17 | 134 | 196 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.88E-15 | 136 | 193 | No hit | No description |
Pfam | PF00046 | 1.5E-16 | 136 | 190 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 7.5E-6 | 163 | 172 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 167 | 190 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.5E-6 | 172 | 188 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 1.8E-23 | 192 | 235 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 8.1E-8 | 192 | 226 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MTMGKEDLGL SLSLGLAQSH HPLQLNLKPT SSPVSNLQMF PWNQNFVSSS DHQKQQFLRK 60 IDVNSLPTTV DLEEETGVSS PNSTISSTVS GKRRSEREGT SGGVGGAGDD LDITLDRSSS 120 RGTSDEEEDY GGETCRKKLR LSKDQSAVLE DTFKEHNTLN PKQKLALAKK LGLTARQVEV 180 WFQNRRARTK LKQTEVDCEY LKRCVEKLTE ENRRLEKEAA ELRALKLSPR LYGQMSPPTT 240 LLMCPSCERV AGPSSSNHNQ RSVSLSPWLQ MAHGSTFDVM RPRS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 184 | 192 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g031260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441252 | 0.0 | AJ441252.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT1. | |||
GenBank | AK228587 | 0.0 | AK228587.1 Arabidopsis thaliana mRNA for homeobox-leucine zipper protein HAT1, complete cds, clone: RAFL15-36-J21. | |||
GenBank | ATU09332 | 0.0 | U09332.1 Arabidopsis thaliana clone HAT1 homeobox protein mRNA, complete cds. | |||
GenBank | AY087322 | 0.0 | AY087322.1 Arabidopsis thaliana clone 34167 mRNA, complete sequence. | |||
GenBank | BT005756 | 0.0 | BT005756.1 Arabidopsis thaliana clone RAFL15-36-J21 (R50164) putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds. | |||
GenBank | BT006112 | 0.0 | BT006112.1 Arabidopsis thaliana clone U50164 putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010440004.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT1-like | ||||
Swissprot | P46600 | 0.0 | HAT1_ARATH; Homeobox-leucine zipper protein HAT1 | ||||
TrEMBL | R0H129 | 0.0 | R0H129_9BRAS; Uncharacterized protein | ||||
STRING | XP_010440004.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1563 | 26 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17460.1 | 1e-156 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
Publications ? help Back to Top | |||
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