PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g031090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 521aa MW: 57946.1 Da PI: 7.8323 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.1 | 3.8e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Csa11g031090.1 7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.4E-11 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 1.92E-16 | 6 | 51 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.9E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 5.0E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.095 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 2.0E-10 | 275 | 368 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RADGDESDDH 60 HRFQRMKSIS LSFKNKETKM LKRKAIQDNN IVIKRPALEF NYGLKKAVIE EDASNRSSSG 120 SAVSNSESCA QFSSADGSEL TGPSQSNAWD TTVPCKRRTC VGRPKSSSVE KLTKDLYNIL 180 QEQQSSCLSV SSEEDLLFEN EMSMVSVEIG HGSILMKNPH SFAREEESES SSLSSIENKS 240 SISEAYSHSV KRVEIGAERG SYYGGQAIKQ EQFRRTKSQT ERVHVLGSHG SPLCSIDLKD 300 VFNFDEFIKQ FTEEEQKKLM KLLPQIDSDN LPDSLRMMFE SAQFKDNFSL FQQLIADGVF 360 DMSSSSGAKP EDIRTFKKLA LTDLNKSTLV ESYYLLKERV KETGNCVATT SKSSNPNVHK 420 NIVTIKRRCE DQTQLKSESR GLMRSPKRVI KMKASHESKV LTENNVSCFN PRSLASVFAQ 480 EGGGSAVFGY EGNCSSDQDL LLLDLPSNGS FPQAELLHQI * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g031090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY062562 | 0.0 | AY062562.1 Arabidopsis thaliana Unknown protein (Z97343.42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010439983.1 | 0.0 | PREDICTED: GATA transcription factor 26 isoform X1 | ||||
Swissprot | Q8W4H1 | 0.0 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | R0F9D0 | 0.0 | R0F9D0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010439983.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 0.0 | GATA transcription factor 26 |