PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g030910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 735aa MW: 81994.4 Da PI: 5.7468 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 105 | 159 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +++t +q++e+e++Fe+++yps+++r +L++ lgLt qVk+WFqN+R++ + Csa11g030910.1 105 SRYHRHTVHQIQEMEAVFEETSYPSENKRLRLSEGLGLTPLQVKFWFQNKRTQIR 159 567889*********************************************9876 PP | |||||||
2 | START | 115.1 | 1e-36 | 257 | 486 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGG.CT-TT-SEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddke.qWdetlakaetlev 84 la ++ qel+ + +++ep+W+k + +n+ ++l ++e +k ++ ea+ra++vv m++++lv+ +ld + + +a++++v Csa11g030910.1 257 LAVSCCQELIIMCDVNEPLWTKKR-LDNESVCLNEEEYKKMflwppmddddrFRREASRAKAVVMMNSMTLVKAFLDAWSeLFCPIVSSAKLIQV 350 788999******************.6777777777777666999999999999************************98889999999******* PP ECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.......-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 85 issg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe......sssvvRaellpSgiliepksnghskvtw 166 iss g l lm+a lq+ spl p R+ +f+Ry ++ ++ +w+ivd ++s + + + + ++ pSg++i++++ng+s+vtw Csa11g030910.1 351 ISSKvsgtnGSLLLMYAGLQVVSPLLPtREGYFLRYLERkAKKVKWIIVDFPIESFRGFVKpastaaTTTIGLYRRKPSGCIIQEMANGYSEVTW 445 ***9999********************************888889*****99987654332223455444444559******************* PP EE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 vehv++++++ +++++ vksg+a+ga +w+a l+rqce+ Csa11g030910.1 446 VEHVEVEEKQEqDEVVKEYVKSGVAFGAERWLAVLKRQCER 486 **********999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.33E-17 | 87 | 162 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 99 | 165 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.228 | 101 | 161 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-16 | 102 | 165 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.71E-14 | 104 | 162 | No hit | No description |
Pfam | PF00046 | 3.9E-16 | 106 | 159 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 136 | 159 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 35.287 | 247 | 489 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.06E-20 | 248 | 488 | No hit | No description |
CDD | cd08875 | 6.17E-90 | 251 | 485 | No hit | No description |
SMART | SM00234 | 1.9E-19 | 256 | 486 | IPR002913 | START domain |
Pfam | PF01852 | 7.7E-29 | 257 | 486 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.1E-9 | 507 | 693 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
METKDKTVMY GDYQVMKSSE DVSYSDSDKI FGSTSSSSPT ATIQNPNLKF TAFDNLNFPY 60 MTPKEEEYGV MSMIGSGSGV STGSGHHYLV ETTAIEEESS AAKKSRYHRH TVHQIQEMEA 120 VFEETSYPSE NKRLRLSEGL GLTPLQVKFW FQNKRTQIRA QQDRRANVML KAENDTLKIE 180 SQELQSSSQC LSCSSCGNNL RLENTRLRQE LDQLRRIVSM RVDPPPPSQE IACFFPETDN 240 NDDVLIAEEE KAIAMELAVS CCQELIIMCD VNEPLWTKKR LDNESVCLNE EEYKKMFLWP 300 PMDDDDRFRR EASRAKAVVM MNSMTLVKAF LDAWSELFCP IVSSAKLIQV ISSKVSGTNG 360 SLLLMYAGLQ VVSPLLPTRE GYFLRYLERK AKKVKWIIVD FPIESFRGFV KPASTAATTT 420 IGLYRRKPSG CIIQEMANGY SEVTWVEHVE VEEKQEQDEV VKEYVKSGVA FGAERWLAVL 480 KRQCERMASL MATNITDLGV IPSVAARKNL MKLSQRMVKT FCLNISNSYG QASTKDTVRI 540 VTRTVSDGFV PCAVSVTYLP YSHHKVFDLL RDNQRLSQLE ILFNGSSFQE VAHIANGSHP 600 GNNTSLLRIN MESNTWHNVE LMLQETCTDD SGSLLVFSTV DADAFQLAMN GKDPSNIPLL 660 PVGFSVVPVN PSDGVKGTSV NLPSCFLTVA IQVLVKNTSG ADAKLDLSTV SAINNRICAT 720 VNRITSALVN DVSN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g030910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010439959.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG4-like isoform X3 | ||||
Swissprot | Q8L7H4 | 0.0 | HDG4_ARATH; Homeobox-leucine zipper protein HDG4 | ||||
TrEMBL | A0A178UX05 | 0.0 | A0A178UX05_ARATH; HDG4 | ||||
STRING | XP_010439957.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4356 | 25 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17710.1 | 0.0 | homeodomain GLABROUS 4 |
Publications ? help Back to Top | |||
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