PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g030670.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 575aa MW: 62095.6 Da PI: 4.5401

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g030670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	454	499	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Csa11g030670.1 454 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 499 799*********************6.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.8E-55	67	272	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.282	450	499	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.92E-14	453	503	No hit	No description
SuperFamily	SSF47459	1.06E-16	453	514	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-16	454	512	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-10	454	499	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.8E-16	456	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MSPTSVQLTD YHLDQSTDGP TNLWSTEDDA SVMEAFIGGS DHSSLFPPLP PPPLAPPALS 60 QVNEDTLQQR LQALIEGANE SWAYAVFWQL SYDFAGEDVE GGGVGGVGLT NNNNNTALLG 120 WGDGYYKGEE EKSRKKKTNP ASAAEQEHRK RVVRELNALI SGGGGEVVNN GGSDEAGDEE 180 VTDTEWFFLV SMTQSFVYGT GLPGQAFSSS NTIWLSGSNA LAGSSCERAR QGQIYGLQTM 240 VCVPCENGVV ELGSSEVIHQ SSDLVDKVDT FFNFNNGGGG CESGSWAFNL NPDQGENDPG 300 MWISEPGVEL GLVAPVIINT GNNSTSNSDS QQISKLCNGG SSVENPKLQV TKSGEMVSFK 360 NGVENGFSSG QSRFMGEDSS NKKRSPVSNN EEGMLSFTSV SVLPRPAKSG DSNHSDLEAS 420 VVKEAESNRT VVEPEKKPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YSLRAVVPNV 480 SKMDKASLLG DAISYINELK SKLLKAESDK EDKRNHPGAK FMEALKELDL EVNHASLSVV 540 NDLMIQQATV KMGNEFFTQD QLKVALMEKV GECS*

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MSPTSVQLTD YHLDQSTDGP TNLWSTEDDA SVMEAFIGGS DHSSLFPPLP PPPLAPPALS  60
QVNEDTLQQR LQALIEGANE SWAYAVFWQL SYDFAGEDVE GGGVGGVGLT NNNNNTALLG  120
WGDGYYKGEE EKSRKKKTNP ASAAEQEHRK RVVRELNALI SGGGGEVVNN GGSDEAGDEE  180
VTDTEWFFLV SMTQSFVYGT GLPGQAFSSS NTIWLSGSNA LAGSSCERAR QGQIYGLQTM  240
VCVPCENGVV ELGSSEVIHQ SSDLVDKVDT FFNFNNGGGG CESGSWAFNL NPDQGENDPG  300
MWISEPGVEL GLVAPVIINT GNNSTSNSDS QQISKLCNGG SSVENPKLQV TKSGEMVSFK  360
NGVENGFSSG QSRFMGEDSS NKKRSPVSNN EEGMLSFTSV SVLPRPAKSG DSNHSDLEAS  420
VVKEAESNRT VVEPEKKPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YSLRAVVPNV  480
SKMDKASLLG DAISYINELK SKLLKAESDK EDKRNHPGAK FMEALKELDL EVNHASLSVV  540
NDLMIQQATV KMGNEFFTQD QLKVALMEKV GECS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rru_A	4e-87	22	268	5	227	Transcription factor MYC3
4ywc_A	4e-87	22	268	5	227	Transcription factor MYC3
4ywc_B	4e-87	22	268	5	227	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	435	443	KKPRKRGRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in jasmonic acid (JA) gene regulation. With MYC2 and MYC3, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269\|PubMed:21321051, ECO:0000269\|PubMed:21335373, ECO:0000269\|PubMed:23943862}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g030670.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. Not induced by jasmonic acid. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:21335373}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF251689	1e-162	AF251689.1 Arabidopsis thaliana putative transcription factor BHLH4 (BHLH4) mRNA, complete cds.
GenBank	AK221507	1e-162	AK221507.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH4, complete cds, clone: RAFL07-57-K04.
GenBank	AL021889	1e-162	AL021889.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project).
GenBank	AL161547	1e-162	AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47.
GenBank	CP002687	1e-162	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010445298.1	0.0	PREDICTED: transcription factor MYC4-like
Swissprot	O49687	0.0	MYC4_ARATH; Transcription factor MYC4
TrEMBL	R0F4A8	0.0	R0F4A8_9BRAS; Uncharacterized protein
STRING	XP_010445298.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1265	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	0.0	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chico JM, et al. Repression of Jasmonate-Dependent Defenses by Shade Involves Differential Regulation of Protein Stability of MYC Transcription Factors and Their JAZ Repressors in Arabidopsis. Plant Cell, 2014. 26(5): p. 1967-1980 [PMID:24824488] Gasperini D, et al. Multilayered Organization of Jasmonate Signalling in the Regulation of Root Growth. PLoS Genet., 2015. 11(6): p. e1005300 [PMID:26070206] Qi T, et al. Regulation of Jasmonate-Induced Leaf Senescence by Antagonism between bHLH Subgroup IIIe and IIId Factors in Arabidopsis. Plant Cell, 2015. 27(6): p. 1634-49 [PMID:26071420] de Torres Zabala M, et al. Novel JAZ co-operativity and unexpected JA dynamics underpin Arabidopsis defence responses to Pseudomonas syringae infection. New Phytol., 2016. 209(3): p. 1120-34 [PMID:26428397] Yu J, et al. JAZ7 negatively regulates dark-induced leaf senescence in Arabidopsis. J. Exp. Bot., 2016. 67(3): p. 751-62 [PMID:26547795] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Schmiesing A,Emonet A,Gouhier-Darimont C,Reymond P Arabidopsis MYC Transcription Factors Are the Target of Hormonal Salicylic Acid/Jasmonic Acid Cross Talk in Response to Pieris brassicae Egg Extract. Plant Physiol., 2016. 170(4): p. 2432-43 [PMID:26884488] Thatcher LF, et al. Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum. J. Exp. Bot., 2016. 67(8): p. 2367-86 [PMID:26896849] Gao C, et al. MYC2, MYC3, and MYC4 function redundantly in seed storage protein accumulation in Arabidopsis. Plant Physiol. Biochem., 2016. 108: p. 63-70 [PMID:27415132] Gimenez-Ibanez S, et al. JAZ2 controls stomata dynamics during bacterial invasion. New Phytol., 2017. 213(3): p. 1378-1392 [PMID:28005270] Lian TF,Xu YP,Li LF,Su XD Crystal Structure of Tetrameric Arabidopsis MYC2 Reveals the Mechanism of Enhanced Interaction with DNA. Cell Rep, 2017. 19(7): p. 1334-1342 [PMID:28514654] Wang H, et al. The bHLH Transcription Factors MYC2, MYC3, and MYC4 Are Required for Jasmonate-Mediated Inhibition of Flowering in Arabidopsis. Mol Plant, 2017. 10(11): p. 1461-1464 [PMID:28827172] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470] Han X, et al. Jasmonate Negatively Regulates Stomatal Development in Arabidopsis Cotyledons. Plant Physiol., 2018. 176(4): p. 2871-2885 [PMID:29496884]