PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g030060.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 406aa MW: 44536 Da PI: 8.3758

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g030060.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.3	5.7e-38	53	193	2	135
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......k 89 g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++ + ++++++++++n + + + Csa11g030060.1 53 SGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSL-NNTN-FPTDDDENQNHQNRTLTttttaaaN 145 689***********************************************************.3333.2223333333332222255666665 PP TCP 90 aaksaa.kskksqksaasalnlak.esrakarararertrekmriknk 135 + +++a +s++++++++s l+l + e r kar+rarert+++ + +++ Csa11g030060.1 146 SLSKSAcSSNSDTSKNSSGLSLLRsELRDKARERARERTAKETKERSS 193 5566665666777777777877777999**********99988866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.2E-38	54	190	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.221	55	113	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.205	170	191	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MFRKLGDDDG MIGDLMKSNN NNNGDVVDNN NGNNRLSRWH HNSSRIIRVS RASGGKDRHS 60 KVLTSKGPRD RRVRLSVSTA LQFYDLQDRL GYDQPSKAVE WLIKAAEDSI SELPSLNNTN 120 FPTDDDENQN HQNRTLTTTT TAAANSLSKS ACSSNSDTSK NSSGLSLLRS ELRDKARERA 180 RERTAKETKE RSSDHHHHQS HTTTFTDLLN SSSDPVNSNR QWMAQAPSAS SPMEYFTSGL 240 ILGSGQQTHF PISTNSHPFS SISDHHHHHQ HHHPHQEFSF VPDHLISPAG SNGGAFNLDF 300 NMSTPSGAGA AVSASSGGGF SGFNRGTLQS NSTTSNQHQS FLANLQRFPT SSEGGGGGPQ 360 FLFGALPAEN HHHNHNHNQN NNHQFQLYYE NGCRNSSDHK GKGKN*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MFRKLGDDDG MIGDLMKSNN NNNGDVVDNN NGNNRLSRWH HNSSRIIRVS RASGGKDRHS  60
KVLTSKGPRD RRVRLSVSTA LQFYDLQDRL GYDQPSKAVE WLIKAAEDSI SELPSLNNTN  120
FPTDDDENQN HQNRTLTTTT TAAANSLSKS ACSSNSDTSK NSSGLSLLRS ELRDKARERA  180
RERTAKETKE RSSDHHHHQS HTTTFTDLLN SSSDPVNSNR QWMAQAPSAS SPMEYFTSGL  240
ILGSGQQTHF PISTNSHPFS SISDHHHHHQ HHHPHQEFSF VPDHLISPAG SNGGAFNLDF  300
NMSTPSGAGA AVSASSGGGF SGFNRGTLQS NSTTSNQHQS FLANLQRFPT SSEGGGGGPQ  360
FLFGALPAEN HHHNHNHNQN NNHQFQLYYE NGCRNSSDHK GKGKN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-23	60	114	1	55	Putative transcription factor PCF6
5zkt_B	3e-23	60	114	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179, ECO:0000269\|PubMed:26596765}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g030060.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:26596765}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010439860.1	0.0	PREDICTED: transcription factor TCP2
Refseq	XP_010439862.1	0.0	PREDICTED: transcription factor TCP2
Swissprot	Q93V43	0.0	TCP2_ARATH; Transcription factor TCP2
TrEMBL	D7MCT1	0.0	D7MCT1_ARALL; Uncharacterized protein
STRING	XP_010439860.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7615	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	7e-74	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]