PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g028690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 338aa    MW: 39389.7 Da    PI: 8.2328
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g028690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.5e-19127173148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
   Csa11g028690.1 127 KGQWTAEEDRILIQLVEKHGLRKWSHIAQVLP-GRIGKQCRERWHNHL 173
                      799*****************************.*************97 PP
2Myb_DNA-binding52.21.4e-16179221145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +  W++eEd  l++ +k+ G++ W+ Ia++++ gRt++++k++w+
   Csa11g028690.1 179 KETWSEEEDIVLIEFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 221
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.298122177IPR017930Myb domain
SuperFamilySSF466891.5E-32125220IPR009057Homeodomain-like
SMARTSM007174.0E-18126175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-27128178IPR009057Homeodomain-like
CDDcd001671.01E-15130173No hitNo description
PfamPF139214.0E-21130189No hitNo description
SMARTSM007171.3E-15178226IPR001005SANT/Myb domain
PROSITE profilePS5129420.484178228IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-22179227IPR009057Homeodomain-like
CDDcd001673.69E-11181224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVEFYESKPQ LMNHHFQAAE NPTYFTRNHR PHHHQEINLV DENDHMDLEQ NNMMMMRMIP  60
LDYPPTETMK PAMNFVMPDE ISCVSADNDY YRSSSSFNKT KPYLTRKLSS SSSSSSWKEK  120
KPSTLVKGQW TAEEDRILIQ LVEKHGLRKW SHIAQVLPGR IGKQCRERWH NHLRPDIKKE  180
TWSEEEDIVL IEFHKEIGNK WAEIAKRLPG RTENSIKNHW NATKRRQFSK RKCRSKYPRP  240
SLLQDYIKSL NLGVLSATSV PARGRRRESS KKKDVVAAVE EKKKDQEEIY GQDRVVPECV  300
FTDDFGFNEK LLEEGCSIDS LLDDIPQPEI DAVVHGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-431252282105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-441252282105C-Myb DNA-Binding Domain
1msf_C8e-441252282105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g028690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1980820.0DQ198082.1 Arabidopsis thaliana myb family transcription factor (MYB98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439813.10.0PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L20.0MYB98_ARATH; Transcription factor MYB98
TrEMBLR0F8H60.0R0F8H6_9BRAS; Uncharacterized protein
STRINGXP_010439813.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.10.0myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]