 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Csa11g027880.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
| Family | CAMTA | ||||||||
| Protein Properties | Length: 1595aa MW: 182223 Da PI: 8.2766 | ||||||||
| Description | CAMTA family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CG-1 | 172.2 | 7.2e-54 | 13 | 129 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95
+ke + rwlk+ e++ iL+n+e+ +ltl++++rp+sgsl+L+nrk+++ frkDG++w++kkdg+tv E+he+LKvg++++l+cyYah+e+nptfq
Csa11g027880.1 13 HKEaQIRWLKPPEVLFILQNHERLTLTLTAPQRPTSGSLFLFNRKVLKLFRKDGHHWRRKKDGRTVAEAHERLKVGNTDALNCYYAHGEHNPTFQ 107
677799***************************************************************************************** PP
CG-1 96 rrcywlLeeelekivlvhylev 117
rr+yw+L+ e+e+ivlvhy++v
Csa11g027880.1 108 RRIYWMLDPEYEHIVLVHYRDV 129
********************97 PP
| |||||||
| 2 | B3 | 57.6 | 2.3e-18 | 263 | 365 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f+ l+++d+ + + l++p + a+++ g +e+ +++ed++g+ W + ++y + ++++ +t+GW+++vk+n+L +gD+v F++++ +
Csa11g027880.1 263 FEMRLKTKDMDNVDSLIIPDEDARNYfpftnfqG-GTES--LIRFEDQDGKGWLFGYSYHNIGSQCEFTRGWSRYVKENQLSVGDSVFFQRHHMD 354
566788999999***********999****9844.4333..7*****************999999*************************76656 PP
EE..EEEEE-S CS
B3 89 efelvvkvfrk 99
+ +++++ +r+
Csa11g027880.1 355 SSKFFIGCRRH 365
66678888886 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51437 | 76.878 | 9 | 135 | IPR005559 | CG-1 DNA-binding domain |
| SMART | SM01076 | 6.9E-79 | 12 | 130 | IPR005559 | CG-1 DNA-binding domain |
| Pfam | PF03859 | 2.4E-47 | 15 | 129 | IPR005559 | CG-1 DNA-binding domain |
| Gene3D | G3DSA:2.40.330.10 | 4.2E-21 | 255 | 374 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.80E-13 | 262 | 364 | No hit | No description |
| SuperFamily | SSF101936 | 8.5E-17 | 262 | 364 | IPR015300 | DNA-binding pseudobarrel domain |
| SMART | SM01019 | 1.0E-5 | 263 | 365 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.0E-16 | 263 | 365 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.998 | 263 | 366 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF52200 | 9.94E-8 | 432 | 533 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| SuperFamily | SSF52540 | 6.33E-39 | 569 | 821 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 8.3E-18 | 592 | 826 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 3.6E-4 | 593 | 623 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| PRINTS | PR00364 | 8.5E-21 | 595 | 610 | No hit | No description |
| PRINTS | PR00364 | 8.5E-21 | 671 | 685 | No hit | No description |
| PRINTS | PR00364 | 8.5E-21 | 762 | 776 | No hit | No description |
| SuperFamily | SSF46785 | 2.26E-7 | 798 | 901 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
| Gene3D | G3DSA:3.40.50.300 | 3.6E-4 | 849 | 900 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52058 | 1.41E-32 | 923 | 1166 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 1.5E-25 | 924 | 1168 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Pfam | PF07725 | 1.3E-9 | 985 | 1004 | IPR011713 | Leucine-rich repeat 3 |
| PRINTS | PR00364 | 8.5E-21 | 1074 | 1090 | No hit | No description |
| PROSITE profile | PS51450 | 5.063 | 1078 | 1097 | IPR001611 | Leucine-rich repeat |
| SMART | SM00369 | 280 | 1098 | 1119 | IPR003591 | Leucine-rich repeat, typical subtype |
| PROSITE profile | PS51450 | 6.441 | 1099 | 1120 | IPR001611 | Leucine-rich repeat |
| SMART | SM00369 | 25 | 1120 | 1144 | IPR003591 | Leucine-rich repeat, typical subtype |
| PROSITE profile | PS51450 | 4.77 | 1122 | 1145 | IPR001611 | Leucine-rich repeat |
| SuperFamily | SSF52058 | 1.7E-13 | 1225 | 1326 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 5.1E-11 | 1229 | 1324 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SMART | SM00369 | 3.9 | 1263 | 1286 | IPR003591 | Leucine-rich repeat, typical subtype |
| PROSITE profile | PS51450 | 7.05 | 1265 | 1286 | IPR001611 | Leucine-rich repeat |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0007165 | Biological Process | signal transduction | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1595 aa Download sequence Send to blast |
MAMQSEYGIS TLHKEAQIRW LKPPEVLFIL QNHERLTLTL TAPQRPTSGS LFLFNRKVLK 60 LFRKDGHHWR RKKDGRTVAE AHERLKVGNT DALNCYYAHG EHNPTFQRRI YWMLDPEYEH 120 IVLVHYRDVS NLQEVTSPIS HSCSGSGITD EKFEAADVGC RDPFEDWTAF FEFLKNSKPP 180 RSLSECTSND AVEFLRRLPT DKVEAVVTSF SGDTFKRILG SHKENPFDNQ IVRTFLMELA 240 EEQTSQKEFV KNMLSHHNKE DLFEMRLKTK DMDNVDSLII PDEDARNYFP FTNFQGGTES 300 LIRFEDQDGK GWLFGYSYHN IGSQCEFTRG WSRYVKENQL SVGDSVFFQR HHMDSSKFFI 360 GCRRHNAGAA PASSSQSAVL NPTSPATSKM KLELREKHME VEIPFQQGLP EHSITGSDPI 420 LVISCGKNQD SEETYFISCI YNELCRRGFT PCSYDLDRST MTGDPYTLYS SRVCIMIITM 480 NYARECLAEF TAIMGHLKAN NLALLPVFFN VIPGSFENSV HASQVYKWRK AINKLFVYKS 540 KQYIKGDECM LAKIIVRDVS LLFGSEAGRN LIGIKLLLGS ILPLIHCHQP SAPQIVGLWG 600 MAGIGKTAIT REIYRTQAQR YDLSYFMPDF HLMCQTKGLS HLRDDFFSKI FGEERVFIDT 660 YDTKISFTRN RFLDKKILIV LDGVSSVRDA EVVVGGFGWF SGGHTIILTS RNRQVLVQCK 720 AKELYEIPKL SEYDSLRLCC QFATEQKWKG KMSLISELVN YTSGIPLALR VLGSSVRQQC 780 TNDEKQHLRR LRQHPPIEIQ DAFRNSFNGL HDNEKDIFLD LACFFRGENK DYVVKILDGC 840 GFFTDLGVNA LIDESLISLV DNKLEMPNIF QDMGRFVVCQ EYEAAGKRTR LWDSNDIADV 900 LTNKTGTEAI EGIFLDMSGL SFELSPAVFE RMHRLRLLKI HCPTSENHCK VSLLQGLYSL 960 SDELRLLHWE RYPRGSLPRN FNPKNLVELN MPYSNMTKLW KGTKNLDKLN RIILSHSRQL 1020 NKFPRLSKAT NLEHIDLEGC TSLVKVNSSI LHHRKLTFLS LKDCSHLRIM PATVHLESLE 1080 VLNLSGCSDL EDLHDFSPNL KELYLAGTAI REIPPSIEEL TRLVTLDLEN CKGLQHLPPG 1140 ISNLKVIVTL KLSGCSNLRN LPIPDTFFLR DSQRLQRKIT TEEYVPLKLH SAMQESRDDL 1200 EEILSAFEYL SSKGIPQESW PWVTITPLPS SILHSLASRL YALVTLFLCK SYLVDITDEL 1260 CRLTSLKALD LGGNSFSQIP ESIKELRKLH SFRLRHCKNL TSLPELPISL EILNAHGCVA 1320 LKSFTLSFEQ FSRHYTFSNC FALSPDFFRK YMKRALDSVE VMAKGHQQEH NNPLAFSICI 1380 PAYAGHEFSV NFKAGSSVMI ELTSGMLRTL SGFTLSVVVE FRDNYRNAAG FGIKCICRKA 1440 RRDLSPRLER IFHCWAPKEA PTVRKDHMFV FGNAKMHPAD GIDHDFLAGW LTFEFHPVNW 1500 QNKLLDDSCT VKRCAVYLIT TTTCDKTHGA KRPSSMNLEE ISSVEHLAPP YKRCRLKRVI 1560 ESVILSLRKR KRENSVSDKK KISHIRASII PKNV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wid_A | 4e-16 | 260 | 378 | 11 | 130 | DNA-binding protein RAV1 |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 1509 | 1513 | TVKRC |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa11g027880.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019087970.1 | 0.0 | PREDICTED: disease resistance protein RRS1-like | ||||
| TrEMBL | A0A1J3CDU9 | 0.0 | A0A1J3CDU9_NOCCA; Disease resistance protein RRS1 | ||||
| STRING | XP_010439695.1 | 0.0 | (Camelina sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM5462 | 9 | 20 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G45260.1 | 1e-156 | Disease resistance protein (TIR-NBS-LRR class) | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|