PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g025840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LSD
Protein Properties Length: 186aa    MW: 19391.3 Da    PI: 8.382
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g025840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.51.2e-09117925
         zf-LSD1  9 sYPrGApsVRCalCdtV 25
                    +YPrGA++V+CalC+t+
  Csa11g025840.1  1 MYPRGASNVCCALCNTI 17
                    9**************97 PP
2zf-LSD145.99.4e-154669124
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                    CggCrt+L+Y+rGA+sVRC++C+t
  Csa11g025840.1 46 CGGCRTMLMYTRGASSVRCSCCQT 69
                    ***********************9 PP
3zf-LSD1499.7e-1693117125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Crt+L+YP+GA+sV+Ca+C++V
  Csa11g025840.1  93 CGHCRTTLMYPYGASSVKCAVCQFV 117
                     ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF069431.1E-7117IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.5E-9120IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.6E-184373IPR005735Zinc finger, LSD1-type
PfamPF069435.7E-124669IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.4E-1490120IPR005735Zinc finger, LSD1-type
PfamPF069435.8E-1493117IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MYPRGASNVC CALCNTINMV PPPPPPHSHP PPPHAHAGMD MAHIVCGGCR TMLMYTRGAS  60
SVRCSCCQTT NLVPGLSNQV PHAPSNQVAQ INCGHCRTTL MYPYGASSVK CAVCQFVTNV  120
NMSNGRVPLP TNRPNGTACP GTMPSSSTST PPSQTQTVVV ENPMSVDESG KLVSNVVVGV  180
TTDKK*
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g025840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU878331e-155U87833.1 Arabidopsis thaliana zinc-finger protein Lsd1 (LSD1) mRNA, complete cds.
GenBankAY0808241e-155AY080824.1 Arabidopsis thaliana putative zinc-finger protein Lsd1 (At4g20380) mRNA, complete cds.
GenBankAY0877941e-155AY087794.1 Arabidopsis thaliana clone 38456 mRNA, complete sequence.
GenBankAY1173161e-155AY117316.1 Arabidopsis thaliana putative zinc-finger protein Lsd1 (At4g20380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434286.11e-106PREDICTED: protein LSD1 isoform X2
RefseqXP_019086113.11e-106PREDICTED: protein LSD1 isoform X2
SwissprotP940772e-92LSD1_ARATH; Protein LSD1
TrEMBLR0F6R01e-100R0F6R0_9BRAS; Uncharacterized protein
STRINGXP_010439582.11e-104(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53452650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-89LSD family protein
Publications ? help Back to Top
  1. Spedaletti V, et al.
    Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana.
    Biochemistry, 2008. 47(17): p. 4936-47
    [PMID:18393445]
  2. Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S
    PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties.
    Plant Cell Rep., 2016. 35(3): p. 527-39
    [PMID:26754794]
  3. Czarnocka W, et al.
    The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator.
    Plant Cell Environ., 2017. 40(11): p. 2644-2662
    [PMID:28555890]
  4. Bernacki MJ, et al.
    LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana.
    Physiol Plant, 2019. 165(2): p. 369-382
    [PMID:30461017]