PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g025410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Dof | ||||||||
Protein Properties | Length: 261aa MW: 29308.4 Da PI: 8.9314 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 114.1 | 6e-36 | 22 | 78 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++c+rC s+ntkfCy+nny +sqPryfCk+CrryWt+GGalrnvP+Ggg rk k++ Csa11g025410.1 22 PRACARCSSNNTKFCYFNNYRMSQPRYFCKNCRRYWTHGGALRNVPIGGGYRKAKQA 78 578**************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-21 | 20 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.428 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-30 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 25 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDNLIVFADE DNQQLNGVKP PPRACARCSS NNTKFCYFNN YRMSQPRYFC KNCRRYWTHG 60 GALRNVPIGG GYRKAKQARI DKSLVSRMVS SDIQHVTPDI QQVNHQPFSY VQENNEFIGS 120 FGASSSFVAA ATVGNHFGSL SDIRSGMVPN VPPSSQSFQP NHRLDFQDGS FEHDYYNVVS 180 STNPFVNQSI GGGYVDNYNG YGMEQYKWNQ SFNNTLTMNH NASTSGSRGS DMTMMNNDNK 240 NKIRYNSVIK HPCHLEKHGP * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00446 | DAP | Transfer from AT4G21080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g025410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010439522.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.5-like | ||||
Swissprot | O49550 | 3e-76 | DOF45_ARATH; Dof zinc finger protein DOF4.5 | ||||
TrEMBL | R0GXA8 | 1e-105 | R0GXA8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010439522.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21080.1 | 4e-70 | Dof-type zinc finger domain-containing protein |