PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g024840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 746aa    MW: 83082.5 Da    PI: 7.709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g024840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.3e-14334430599
                     -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     l+ sd+++ gr+vlpkk+ae++  +++++e++ l++ d+ g++W + +++  ++ks+ yvl+ G     ++ +L++gD+v+F + +  e++l+++
  Csa11g024840.1 334 LSASDTGRVGRMVLPKKCAEAFlpQISNPEGVPLKILDPMGKEWIFHFRFwaTNKSRIYVLE-GVGPCIQSLQLQTGDTVIFNRLD-PERKLMLG 426
                     678999******************88888999****************99666666669988.********************765.78888988 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++++
  Csa11g024840.1 427 FRKA 430
                     8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0135904198IPR019786Zinc finger, PHD-type, conserved site
SMARTSM010191.0E-12330431IPR003340B3 DNA binding domain
PROSITE profilePS508639.657330431IPR003340B3 DNA binding domain
SuperFamilySSF1019364.84E-15333429IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-11334430IPR003340B3 DNA binding domain
CDDcd100174.14E-16334429No hitNo description
Gene3DG3DSA:2.40.330.103.2E-21334440IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MLSSSSMSSS RFCFNHECSE FKLQHCRPGW RIRTGDLVDL CDRCASVYEQ GKFCDVFHLK  60
ASGWRCCESC GKRVHCGCIV SASAYMLLDA GGIECLACAR KKFALGPNFS PSPSFLFQSP  120
ISEKFKDLSL NWSSSTRSNQ MSFQPPSCSG PSFLQFDLRN RGDNNEFSQP TSKERAAACS  180
MERKRGLNNM IGKLVSENSK NYEVSPFTNG TNVNVYHPLI SIKEGSCGTQ FAFPVPITTP  240
IERTGHSRLG GSHLWHTANC SPLSRLHNDL NGGADSPFEC KSRNVRTHFD TPGTYQVVPQ  300
YWPKVSYINQ VLQNQSKEYP SCLIDAALAN NVMLSASDTG RVGRMVLPKK CAEAFLPQIS  360
NPEGVPLKIL DPMGKEWIFH FRFWATNKSR IYVLEGVGPC IQSLQLQTGD TVIFNRLDPE  420
RKLMLGFRKA SVAQSSDQET DSTNSNRDTC TNRDAEPADM HSLSKVKKSA YITKETPGVE  480
ISSSKKKSSM MITRGKRRKV EKGDHIELKL TWEEVQGFLL PPPNFTPSKV MIEDSEFEEY  540
EDAPIIGKPI DDTGFRSTCT PDQEPVAEQQ DEETMEDVEG LLMSPKTTKK HPRHRNDCTC  600
IVCIQSPSGA GTKHDRCCSC AVSEAGKRRR RSLLLRREKQ QMGKEDNAHT ELEQPNSDNE  660
LRQSANNSEN HEGLASPLKG QLDLNFKPEK DGESLPGSNK TTKKKTLHHD DTVKSSFKSP  720
SSSTAHSQIN KEEEEEIAET TTSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fas_A9e-4033443113110B3 domain-containing transcription repressor VAL1
6fas_B9e-4033443113110B3 domain-containing transcription repressor VAL1
6j9a_A1e-3933443328127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1484498KKKSSMMITRGKRRK
2632639LLLRREKQ
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g024840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226030.0AL022603.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project).
GenBankAL1615550.0AL161555.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439457.10.0PREDICTED: B3 domain-containing transcription factor VAL3-like isoform X2
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLR0GUV90.0R0GUV9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010439456.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3