PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g024550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 766aa    MW: 83654.3 Da    PI: 5.6423
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g024550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1962117156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++eLe++F+++++p+ ++r+eL+++l+L+  qVk+WFqN+R+++k
  Csa11g024550.1  62 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVKFWFQNKRTQMK 117
                     688999***********************************************998 PP
2START213.38.5e-672614801206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++elv++a+ ++p+Wv      e++n++e+ ++f+++ +      ++ea+r+s+vv+m++ +l e+l+d++ qW+  +     +a tle
  Csa11g024550.1 261 ELAVAAMEELVRMAQTGDPLWVPNEnsvEILNEEEYFRTFPRGIGpkpmgLRSEASRESTVVIMNHINLIEILMDVN-QWSSVFCgivsRALTLE 354
                     57899*****************988888**************999********************************.******99999****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g w++vdvS+ds ++ p    + R++++pSg+li++++ng+skvtwveh++
  Csa11g024550.1 355 VLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGIWAVVDVSLDSLRPSP----ITRSRRRPSGCLIQELQNGYSKVTWVEHTE 445
                     ***********************************************************99....7***************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r++h+++++lv++gla+gak+wvatl+rqce+
  Csa11g024550.1 446 VDDRSVHNMYKPLVNTGLAFGAKRWVATLDRQCER 480
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-2243117IPR009057Homeodomain-like
SuperFamilySSF466891.63E-1851119IPR009057Homeodomain-like
PROSITE profilePS5007117.00659119IPR001356Homeobox domain
SMARTSM003891.5E-1760123IPR001356Homeobox domain
CDDcd000862.69E-1862120No hitNo description
PfamPF000467.5E-1762117IPR001356Homeobox domain
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PROSITE profilePS5084845.407252483IPR002913START domain
SuperFamilySSF559612.75E-35254482No hitNo description
CDDcd088753.14E-126256479No hitNo description
SMARTSM002342.3E-78261480IPR002913START domain
PfamPF018523.5E-56262480IPR002913START domain
Gene3DG3DSA:3.30.530.207.7E-6360479IPR023393START-like domain
SuperFamilySSF559614.85E-23501679No hitNo description
SuperFamilySSF559614.85E-23718757No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MYHPNMFESH HHMFDMTPKN SENDLGITGS QEDFETKSGA EVTMENPLEE ELQDPNQRPN  60
KKKRYHRHTQ RQIQELESFF KECPHPDDKQ RKELSRELSL EPLQVKFWFQ NKRTQMKAQH  120
ERHENQILKS ENDKLRAENN RYKDALSNAT CPNCGGPAAI GEMSFDEQHL RIENARLREE  180
IDRISAIAAK YVGKPLMANS SPFPQLTSSH HIPSRSLDLE VGNFGNNSNS QAGFVGEMYG  240
TSDILRSVSI PSEADKPMIV ELAVAAMEEL VRMAQTGDPL WVPNENSVEI LNEEEYFRTF  300
PRGIGPKPMG LRSEASREST VVIMNHINLI EILMDVNQWS SVFCGIVSRA LTLEVLSTGV  360
AGNYNGALQV MTAEFQVPSP LVPTRENYFV RYCKQHSDGI WAVVDVSLDS LRPSPITRSR  420
RRPSGCLIQE LQNGYSKVTW VEHTEVDDRS VHNMYKPLVN TGLAFGAKRW VATLDRQCER  480
LASSMASNIP AGDLSVITSA EGRKSMLKLA ERMVMSFCSG VGASTAHAWT TLSTTGSDDV  540
RVMTRKSMDD PGRPPGIVLS AATSFWIPVA PKRVFDFLRD ENSRSEWDIL SNGGLVQEMA  600
HIANGRDPGN SVSLLRVNSG NSGQSNMLIL QESCTDASGS YVIYAPVDIM AMNVVLSGGD  660
PDYVALLPSG FAILPDGSAR IGGGSASTGA GGAGAEGGGG GEGNNLEVVT TTTGNNGGSL  720
LTVAFQILVD SVPTAKLSLG SVATVNSLIK CTVERIKAAL ACEGA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g024550.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2299700.0AK229970.1 Arabidopsis thaliana mRNA for L1 specific homeobox gene ATML1/ovule-specific homeobox protein A20, complete cds, clone: RAFL22-43-B20.
GenBankAY0911040.0AY091104.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds.
GenBankAY1504910.0AY150491.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439429.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
RefseqXP_010439430.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLR0GNC90.0R0GNC9_9BRAS; Uncharacterized protein
STRINGXP_010439429.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]