PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g023560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 270aa    MW: 30356.9 Da    PI: 5.189
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g023560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ +   G  +W++ +++ g++R++k+c++rw +yl
   Csa11g023560.1 14 KGPWTAEEDKKLINFILTNGHCCWRALPKMAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding513.4e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + +E+++ +d+++ lG++ W++Ia++++ gRt++++k++w+++
   Csa11g023560.1  71 SNDEEQIVIDLHAHLGNK-WSKIASRLP-GRTDNEIKNHWNTH 111
                      789***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-21562IPR009057Homeodomain-like
PROSITE profilePS5129412.695961IPR017930Myb domain
SuperFamilySSF466891.59E-2611108IPR009057Homeodomain-like
SMARTSM007172.2E-121363IPR001005SANT/Myb domain
PfamPF002492.8E-141461IPR001005SANT/Myb domain
CDDcd001673.21E-91661No hitNo description
PROSITE profilePS5129427.12262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2463116IPR009057Homeodomain-like
SMARTSM007172.5E-1466114IPR001005SANT/Myb domain
CDDcd001677.14E-1171112No hitNo description
PfamPF002492.5E-1471111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLINFIL TNGHCCWRAL PKMAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SNDEEQIVID LHAHLGNKWS KIASRLPGRT DNEIKNHWNT HIKKKLLKMG  120
IDPVTHQPLT QEPCNTDNSK TISSNQDDGS LEPKTTSTKT LEISGTTTTE DESSSTVTDQ  180
NSLVDNENHI LDNIYNDDEL FSYLWSDETT KAEGSWSDSN YGAVGGTLCD NNMLGTVADI  240
PIWSPEGIND KDWMFLDYCQ DFGVHDFGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g023560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439306.10.0PREDICTED: protein ODORANT1
SwissprotQ50EX62e-90ODO1_PETHY; Protein ODORANT1
TrEMBLR0GY121e-175R0GY12_9BRAS; Uncharacterized protein
STRINGXP_010439306.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-158myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]