PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g020870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARF
Protein Properties Length: 641aa    MW: 72270.8 Da    PI: 6.8784
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g020870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.1e-23115216199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ ed +g +W++++i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  Csa11g020870.1 115 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFRHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGE 205
                     88****************************9643..445569************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+ +r+
  Csa11g020870.1 206 NGELRVGGRRA 216
                     9999***9987 PP
2Auxin_resp1125.8e-37241320183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha++ k++F v+Y+Pr+  s+F+++++k+++a+++k+svGmRfkm+fe+eds+err+sGtv+gv+d++p +W++SkWr+L+
  Csa11g020870.1 241 ACHATQAKTMFIVYYKPRT--SQFIISLNKYLEAMNNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSP-HWKDSKWRCLE 320
                     6799**************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-39106244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-41109230IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-20113215No hitNo description
SMARTSM010192.2E-23115217IPR003340B3 DNA binding domain
PfamPF023621.9E-21115216IPR003340B3 DNA binding domain
PROSITE profilePS5086312.139115217IPR003340B3 DNA binding domain
PfamPF065075.3E-33241319IPR010525Auxin response factor
PfamPF023093.0E-13505614IPR033389AUX/IAA domain
SuperFamilySSF542771.77E-13520602No hitNo description
PROSITE profilePS5174526.174526618IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MTNQGGEGLY DELWKLCAGP LVDVPQAGER VYYFPQGHME QLEASTQQDL NTIKPLFFLP  60
PKILCNVMNV RLQAEKDTDE VYAQITLIPV GTKVDEPMSP DPSPPELQKP KVHSFSKVLT  120
ASDTSTHGGF SVLRKHATEC LPPLDMTQQT PTQELVAEDV HGYQWKFRHI FRGQPRRHLL  180
TTGWSTFVTS KRLVAGDTFV FLRGENGELR VGGRRANRQQ SSMPSSVISS HSMHLGVLAT  240
ACHATQAKTM FIVYYKPRTS QFIISLNKYL EAMNNKFSVG MRFKMRFEGE DSPERRYSGT  300
VIGVKDCSPH WKDSKWRCLE VHWDEPASIP RPDKVSPWEI ESFVTSESVP QSVMLMKKRP  360
RQVSEVSALG ETQSKAVILA SITASNLWQS HEFAQSCLTS QRSSSQQCYR DSTEDAKKSD  420
WLNNSYSVSN LSKDSTLNDQ MVSPVEQKKP ETTANYRLFG IDLMSSSLAA SEEKTAPMRP  480
INITKSTPDS NSDPKSEISK VSEEKKQEPP QTSSKEVQSK QISSTRSRIK VQMQGVPVGR  540
AVDLTALNGY NELIDDLEKL FDIKGELQSR NQWEIVFTDD EGDMMLVGDD PWPEFCNMVK  600
RIFIWSKEEV KKMTPGNQLR MMLTEVETIT TISKSDNHSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-162734117353Auxin response factor 1
4ldw_A1e-162734117353Auxin response factor 1
4ldw_B1e-162734117353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g020870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0821760.0AF082176.1 Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439105.10.0PREDICTED: auxin response factor 9-like isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A178V4030.0A0A178V403_ARATH; Auxin response factor
STRINGXP_010439105.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9