PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g020780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 1255aa    MW: 138040 Da    PI: 6.2827
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g020780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.46.8e-29698748252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++
  Csa11g020780.1 698 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 748
                     799**********************************************97 PP

2RWP-RK23.98.3e-089209353752
          RWP-RK  37 RqyGIkRWPhRkiksl 52 
                     Rq+GI+RWP+Rkik++
  Csa11g020780.1 920 RQHGISRWPSRKIKKV 935
                     9*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF557815.4E-5321392IPR029016GAF domain-like
PROSITE profilePS5151917.757687768IPR003035RWP-RK domain
PfamPF020421.0E-25700748IPR003035RWP-RK domain
SuperFamilySSF542773.92E-2311541243No hitNo description
PfamPF005643.1E-2011581239IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.0E-2711581240No hitNo description
SMARTSM006661.7E-2811581240IPR000270PB1 domain
PROSITE profilePS5174527.73911581240IPR000270PB1 domain
CDDcd064072.70E-3411591239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1255 aa     Download sequence    Send to blast
MCEPDDNSGR NGVAHPPSSR SRELLMDVDD LDLDGSWPLD QIPYLSSSNR MISPIFVSSS  60
SEQPCSPLWA FSDGGGNGGI HHHANGGGGG DEEKNSSASG VPSFRLAEYP LFLPYSSPSA  120
AENTTEKHNN NFQFPSPLMS LVPPENADNY CVIKERMTQA LRYFKDSTEQ HVLAQVWAPV  180
RKNGRDLLTT LGQPFVLNPN VKVTLSSDSL VEFSVRNCLN GLLMFSTIPA KNSPXXXXXX  240
XXXXXXXXXA DNYCVIKERM TQALRYFKDS TEQHVLAQVW APVRKNGRDL LTTLGQPFVL  300
NPNGNGLNQY RMISLTYMFS VDSESDIELG LPGRVFRQKL PEWTPNVQYY SSKEFSRLDH  360
ALHYNVRGTL ALPVFNPSGQ SCIGVVELIM TSEKIHYAPE VDKVCKALEA VNLKSSEILD  420
HQTTQICNES RQNALAEILE VLTVVCETHN LPLAQTWVPC QHGSVLANGG GLKKNCTSFD  480
GSCMGQICMS TTDMACYVVD AHVWGFRDAC LEHHLQKGQG VAGRAFLNGG SCFCRDITKF  540
CKTQYPLVHY ALMFKLTTCF AISLQSSYTG DDSYILEFFL PSSITDDEEQ DSLLGSILVT  600
MKEHFQSLRV ASGVDFGEDD DKLSFEIIQA LPDKKIHSKI ESIRVPFSGS KSNATETRLI  660
PQPTVQSSDP VKENINVATV NGVVKEKKKT EKKRGKTEKT ISLDVLQQYF TGSLKDAAKS  720
LGVCPTTMKR ICRQHGISRW PSRKIKKVNR SITKLKRVIE SVQGTDGGLD LTSMAVSSIP  780
WTHGQTSAQP LNSPSGSKPP EVPNTNNSPN HWSSDHSPQE PNGSPELPSN GHKRSRTVDE  840
SAGTPTSHGS CDGNQLDEAK VPNQDPLFTV GESPGLFFPP YSRDHDVSAA SFSMPNRLLG  900
SIDHFRGMLI EDTGTTTMXR QHGISRWPSR KIKKVNRSIT KLKRVIESVQ GTDGGLDLTS  960
MAVSSIPWTH GQTSAQPLNS PSGSKPPEVP NTNNSPNHWS SDHSPQEPNG SPELPSNGHK  1020
RSRTVDESAG TPTSHGSCDG NQLDEAKVPN QDPLFTVGES PGLFFPPYSR DHDVSAASFS  1080
MPNRLLGSID HFRGMLIEDT GSSKDLRNLC STTAFDDKFP DSNWMNNDNN SNNNVYAPPK  1140
EEAIANVTRE PSGLETRTVT IKASYKEDII RFRISSGSGI MELKDEVAKR LKLDAGTFDI  1200
KYLDDDNEWV LIACDADLQE CLEIPRSSRT NIVRLLVHDV TTNLGSSCES TGEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g020780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2284520.0AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBankBT0057760.0BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439097.10.0PREDICTED: protein NLP7-like
SwissprotQ84TH90.0NLP7_ARATH; Protein NLP7
TrEMBLR0GSX50.0R0GSX5_9BRAS; Uncharacterized protein
STRINGXP_010439097.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25072666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7
Publications ? help Back to Top
  1. Xu N, et al.
    The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.
    Plant Cell, 2016. 28(2): p. 485-504
    [PMID:26744214]
  2. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  3. Yu LH, et al.
    Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation.
    Sci Rep, 2016. 6: p. 27795
    [PMID:27293103]
  4. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  5. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]
  6. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  7. Liu KH, et al.
    Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks.
    Nature, 2017. 545(7654): p. 311-316
    [PMID:28489820]
  8. Li Z, et al.
    The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1.
    New Phytol., 2017. 216(4): p. 1205-1222
    [PMID:28850721]
  9. Cao H, et al.
    Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation.
    Front Plant Sci, 2017. 8: p. 1703
    [PMID:29051766]
  10. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]
  11. Karve RA,Iyer-Pascuzzi AS
    Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release.
    Plant Signal Behav, 2018. 13(1): p. e1414122
    [PMID:29215953]
  12. Zhao L, et al.
    The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium.
    Sci Rep, 2018. 8(1): p. 1487
    [PMID:29367694]