PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g020780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Nin-like | ||||||||
Protein Properties | Length: 1255aa MW: 138040 Da PI: 6.2827 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.4 | 6.8e-29 | 698 | 748 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Csa11g020780.1 698 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 748 799**********************************************97 PP | |||||||
2 | RWP-RK | 23.9 | 8.3e-08 | 920 | 935 | 37 | 52 |
RWP-RK 37 RqyGIkRWPhRkiksl 52 Rq+GI+RWP+Rkik++ Csa11g020780.1 920 RQHGISRWPSRKIKKV 935 9*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55781 | 5.4E-5 | 321 | 392 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 17.757 | 687 | 768 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.0E-25 | 700 | 748 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.92E-23 | 1154 | 1243 | No hit | No description |
Pfam | PF00564 | 3.1E-20 | 1158 | 1239 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 2.0E-27 | 1158 | 1240 | No hit | No description |
SMART | SM00666 | 1.7E-28 | 1158 | 1240 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 27.739 | 1158 | 1240 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.70E-34 | 1159 | 1239 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1255 aa Download sequence Send to blast |
MCEPDDNSGR NGVAHPPSSR SRELLMDVDD LDLDGSWPLD QIPYLSSSNR MISPIFVSSS 60 SEQPCSPLWA FSDGGGNGGI HHHANGGGGG DEEKNSSASG VPSFRLAEYP LFLPYSSPSA 120 AENTTEKHNN NFQFPSPLMS LVPPENADNY CVIKERMTQA LRYFKDSTEQ HVLAQVWAPV 180 RKNGRDLLTT LGQPFVLNPN VKVTLSSDSL VEFSVRNCLN GLLMFSTIPA KNSPXXXXXX 240 XXXXXXXXXA DNYCVIKERM TQALRYFKDS TEQHVLAQVW APVRKNGRDL LTTLGQPFVL 300 NPNGNGLNQY RMISLTYMFS VDSESDIELG LPGRVFRQKL PEWTPNVQYY SSKEFSRLDH 360 ALHYNVRGTL ALPVFNPSGQ SCIGVVELIM TSEKIHYAPE VDKVCKALEA VNLKSSEILD 420 HQTTQICNES RQNALAEILE VLTVVCETHN LPLAQTWVPC QHGSVLANGG GLKKNCTSFD 480 GSCMGQICMS TTDMACYVVD AHVWGFRDAC LEHHLQKGQG VAGRAFLNGG SCFCRDITKF 540 CKTQYPLVHY ALMFKLTTCF AISLQSSYTG DDSYILEFFL PSSITDDEEQ DSLLGSILVT 600 MKEHFQSLRV ASGVDFGEDD DKLSFEIIQA LPDKKIHSKI ESIRVPFSGS KSNATETRLI 660 PQPTVQSSDP VKENINVATV NGVVKEKKKT EKKRGKTEKT ISLDVLQQYF TGSLKDAAKS 720 LGVCPTTMKR ICRQHGISRW PSRKIKKVNR SITKLKRVIE SVQGTDGGLD LTSMAVSSIP 780 WTHGQTSAQP LNSPSGSKPP EVPNTNNSPN HWSSDHSPQE PNGSPELPSN GHKRSRTVDE 840 SAGTPTSHGS CDGNQLDEAK VPNQDPLFTV GESPGLFFPP YSRDHDVSAA SFSMPNRLLG 900 SIDHFRGMLI EDTGTTTMXR QHGISRWPSR KIKKVNRSIT KLKRVIESVQ GTDGGLDLTS 960 MAVSSIPWTH GQTSAQPLNS PSGSKPPEVP NTNNSPNHWS SDHSPQEPNG SPELPSNGHK 1020 RSRTVDESAG TPTSHGSCDG NQLDEAKVPN QDPLFTVGES PGLFFPPYSR DHDVSAASFS 1080 MPNRLLGSID HFRGMLIEDT GSSKDLRNLC STTAFDDKFP DSNWMNNDNN SNNNVYAPPK 1140 EEAIANVTRE PSGLETRTVT IKASYKEDII RFRISSGSGI MELKDEVAKR LKLDAGTFDI 1200 KYLDDDNEWV LIACDADLQE CLEIPRSSRT NIVRLLVHDV TTNLGSSCES TGEL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g020780.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228452 | 0.0 | AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13. | |||
GenBank | BT005776 | 0.0 | BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010439097.1 | 0.0 | PREDICTED: protein NLP7-like | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | R0GSX5 | 0.0 | R0GSX5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010439097.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2507 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |