PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g020730.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 587aa    MW: 63056.6 Da    PI: 7.2036
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g020730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.3e-3952112262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s+
  Csa11g020730.1  52 KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 112
                     7899******************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2745104IPR003851Zinc finger, Dof-type
PfamPF027017.2E-3353110IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9156110IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105894IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MDTAHWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPTAG AVGGERKARP EKDQAVNCPR  60
CNSTNTKFCY YNNYSLTQPR YFCKGCRRYW TEGGSLRNIP VGGGSRKNKR SHSSSISSSS  120
DISHNHSVST QPATKKHLSD HHHHHLMSMS QQGLTGQNPK FLETTQQDLN LGFPPHGMIR  180
TNFTDLIHNI GNNSNNTNKS HNNNNPLLVS SCSAMATSSL DLIRNNSNNG NSSSSSFMGF  240
PVHNQDPTSG GFSMQDHYKP CNTNTTLLGF SLDHHHNNGF HGGFQGGEGG GEGGDDDVNG  300
RHLFPFEDLK LPVSSSSASV SVDINDHQKR GSSGGDAAAT SGGYWTGMLS GGSCHNHSVS  360
TQPATKKHLS DHHHHHLMSM SQQGLTGQNP KFLETTQQDL NLGFPPHGMI RTNFTDLIHN  420
IGNNSNNTNK SHNNNNPLLV SSCSAMATSS LDLIRNNSNN GNSSSSSFMG FPVHNQDPTS  480
GGFSMQDHYK PCNTNTTLLG FSLDHHHNNG FHGGFQGGEG GGEGGDDDVN GRHLFPFEDL  540
KLPVSSSSAS VSVDINDHQK RGSSGGDAAA TSGGYWTGML SGGSWC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g020730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936960.0AB493696.1 Arabidopsis thaliana At4g24060 mRNA for hypothetical protein, partial cds, clone: RAAt4g24060.
GenBankAK3171530.0AK317153.1 Arabidopsis thaliana AT4G24060 mRNA, complete cds, clone: RAFL21-94-L04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137416.10.0PREDICTED: dof zinc finger protein DOF4.6-like
RefseqXP_022570837.10.0dof zinc finger protein DOF4.6-like
SwissprotQ8LAP80.0DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A397L7650.0A0A397L765_BRACM; Uncharacterized protein
TrEMBLM4DRV40.0M4DRV4_BRARP; Uncharacterized protein
STRINGBostr.7867s0213.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34332761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-129Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]