PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g020730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Dof | ||||||||
Protein Properties | Length: 587aa MW: 63056.6 Da PI: 7.2036 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.1 | 2.3e-39 | 52 | 112 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s+ Csa11g020730.1 52 KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 112 7899******************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 45 | 104 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.2E-33 | 53 | 110 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.91 | 56 | 110 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 58 | 94 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MDTAHWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPTAG AVGGERKARP EKDQAVNCPR 60 CNSTNTKFCY YNNYSLTQPR YFCKGCRRYW TEGGSLRNIP VGGGSRKNKR SHSSSISSSS 120 DISHNHSVST QPATKKHLSD HHHHHLMSMS QQGLTGQNPK FLETTQQDLN LGFPPHGMIR 180 TNFTDLIHNI GNNSNNTNKS HNNNNPLLVS SCSAMATSSL DLIRNNSNNG NSSSSSFMGF 240 PVHNQDPTSG GFSMQDHYKP CNTNTTLLGF SLDHHHNNGF HGGFQGGEGG GEGGDDDVNG 300 RHLFPFEDLK LPVSSSSASV SVDINDHQKR GSSGGDAAAT SGGYWTGMLS GGSCHNHSVS 360 TQPATKKHLS DHHHHHLMSM SQQGLTGQNP KFLETTQQDL NLGFPPHGMI RTNFTDLIHN 420 IGNNSNNTNK SHNNNNPLLV SSCSAMATSS LDLIRNNSNN GNSSSSSFMG FPVHNQDPTS 480 GGFSMQDHYK PCNTNTTLLG FSLDHHHNNG FHGGFQGGEG GGEGGDDDVN GRHLFPFEDL 540 KLPVSSSSAS VSVDINDHQK RGSSGGDAAA TSGGYWTGML SGGSWC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g020730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493696 | 0.0 | AB493696.1 Arabidopsis thaliana At4g24060 mRNA for hypothetical protein, partial cds, clone: RAAt4g24060. | |||
GenBank | AK317153 | 0.0 | AK317153.1 Arabidopsis thaliana AT4G24060 mRNA, complete cds, clone: RAFL21-94-L04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009137416.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
Refseq | XP_022570837.1 | 0.0 | dof zinc finger protein DOF4.6-like | ||||
Swissprot | Q8LAP8 | 0.0 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A397L765 | 0.0 | A0A397L765_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DRV4 | 0.0 | M4DRV4_BRARP; Uncharacterized protein | ||||
STRING | Bostr.7867s0213.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3433 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-129 | Dof family protein |
Publications ? help Back to Top | |||
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