PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g020630.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRF

Protein Properties

Length: 436aa MW: 47718.7 Da PI: 9.2329

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g020630.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70.6	2e-22	181	225	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rC+RtDGKkWRCsr+v++++k+C rH h++r rsrk++e+ Csa11g020630.1 181 DQEPWRCKRTDGKKWRCSRNVIPDQKYCKRHTHKSRPRSRKHVES 225 68****************************************997 PP
2	QLQ	53.7	6.3e-19	112	146	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 aF++aQ+q+L++Q +yKy++a++PvP+eLl + + Csa11g020630.1 112 AFSNAQWQELERQRNIYKYMMASVPVPSELLSPFP 146 8******************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.7E-11	111	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.957	112	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.1E-12	112	144	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.466	181	225	IPR014977	WRC domain
Pfam	PF08879	1.4E-18	183	224	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MGTRAERKEG YIGGFGFGVV EHSHKDVMVL PHHHYHPSYS SPSSSSLCYC SAGLGDPMFS 60 VSSNQAYASS HGDMFSHAGS SSASVTVADP FFTLSSSSGE IGRSMSGNAS VAFSNAQWQE 120 LERQRNIYKY MMASVPVPSE LLSPFPKNHP PTTNPNVTVA MTKGGSLQLG IASIASNNTA 180 DQEPWRCKRT DGKKWRCSRN VIPDQKYCKR HTHKSRPRSR KHVESSHQSS NHSDTRSSAK 240 NDTSQFTRAY PQFYGQPVNQ VPVLSTLQSA SSLYDHNRGL RWFRKEGDAT GTLNPEIHET 300 VPLKVGSRRE LKRGFNYDLN FRQKEPIVDQ SFGALQSLLS VNQTPHNQET RRFVVQGKQD 360 EAMGSSLTLS MAGGGSMEEA EGTNQHHQWV SHEGLSWIYS TTTPGGPLAE ALYLGVSTNN 420 PSSSTTTSSC SRSSS*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MGTRAERKEG YIGGFGFGVV EHSHKDVMVL PHHHYHPSYS SPSSSSLCYC SAGLGDPMFS  60
VSSNQAYASS HGDMFSHAGS SSASVTVADP FFTLSSSSGE IGRSMSGNAS VAFSNAQWQE  120
LERQRNIYKY MMASVPVPSE LLSPFPKNHP PTTNPNVTVA MTKGGSLQLG IASIASNNTA  180
DQEPWRCKRT DGKKWRCSRN VIPDQKYCKR HTHKSRPRSR KHVESSHQSS NHSDTRSSAK  240
NDTSQFTRAY PQFYGQPVNQ VPVLSTLQSA SSLYDHNRGL RWFRKEGDAT GTLNPEIHET  300
VPLKVGSRRE LKRGFNYDLN FRQKEPIVDQ SFGALQSLLS VNQTPHNQET RRFVVQGKQD  360
EAMGSSLTLS MAGGGSMEEA EGTNQHHQWV SHEGLSWIYS TTTPGGPLAE ALYLGVSTNN  420
PSSSTTTSSC SRSSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g020630.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL109619	1e-147	AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project).
GenBank	AL161561	1e-147	AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61.
GenBank	ATAC002343	1e-147	AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence.
GenBank	CP002687	1e-147	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010439079.1	0.0	PREDICTED: growth-regulating factor 8-like
Swissprot	Q9SU44	0.0	GRF8_ARATH; Growth-regulating factor 8
TrEMBL	R0H228	0.0	R0H228_9BRAS; Uncharacterized protein
STRING	XP_010439079.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7836	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	0.0	growth-regulating factor 8

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]