PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g020260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 308aa MW: 33285.9 Da PI: 5.7886 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48 | 1.7e-15 | 213 | 249 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ +g+ Csa11g020260.1 213 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGT 249 ******999************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 6.7E-15 | 76 | 111 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.79 | 76 | 111 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.4E-12 | 78 | 110 | IPR010399 | Tify domain |
Pfam | PF06203 | 3.1E-14 | 145 | 187 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 11.985 | 145 | 187 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 8.08E-13 | 206 | 261 | No hit | No description |
PROSITE profile | PS50114 | 10.633 | 207 | 268 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.4E-17 | 207 | 260 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.7E-15 | 211 | 254 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.02E-16 | 212 | 258 | No hit | No description |
Pfam | PF00320 | 5.3E-13 | 213 | 249 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 213 | 240 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MYGRHSQPVL IPNNDSAGGE DHVSASATSG HIPYEDMDEI PHPDSIYGGT GSDLIPDGSQ 60 LVAHRSEPSE LLVSRPPEGS NQLTISFRGQ VYVFDAVGPD KVDAVLSLLG GSTELASGPQ 120 VMELAHQQNH MPVVEYQSRC NLPQRAQSLD RFRKKRNARC FEKKVRYGVR QEVALRMARN 180 KGQFTSSKMT DGAYNSGTDQ DSAQDDGHPE ISCTHCGISS KCTPMMRRGP SGPRTLCNAC 240 GLFWANRGTL RDLSKKTEEN QLPLIKMGEG GSIADADNSN SEPATVEEDT SLVPLANGEN 300 SYVLGNH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g020260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB035310 | 0.0 | AB035310.1 Arabidopsis thaliana mRNA for ZIM, complete cds. | |||
GenBank | AY086038 | 0.0 | AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010439027.1 | 0.0 | PREDICTED: GATA transcription factor 25-like | ||||
Refseq | XP_010439028.1 | 0.0 | PREDICTED: GATA transcription factor 25-like | ||||
Refseq | XP_010439029.1 | 0.0 | PREDICTED: GATA transcription factor 25-like | ||||
Swissprot | Q9LRH6 | 0.0 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | R0H040 | 0.0 | R0H040_9BRAS; Uncharacterized protein | ||||
STRING | XP_010439027.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5006 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 0.0 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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