PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g017960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 701aa    MW: 76233.6 Da    PI: 5.5351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g017960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.68.3e-26141181242
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-S CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversa 42 
                     dDgynWrKYGqK vkgse+prsYY+Ct+++C++kkkver +
  Csa11g017960.1 141 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERLS 181
                     8**************************************87 PP
2WRKY103.11.5e-32324381260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkgse+prsYY+Ct+++C++kkkvers+ +++++ei+Y+g+Hnh+k
  Csa11g017960.1 324 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSR-EGHIIEIIYTGSHNHPK 381
                     8****************************************.***************85 PP
3WRKY97.96.7e-31503560158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver ++d k v +tY g+H+h
  Csa11g017960.1 503 LDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERVSDDFKSVLTTYIGKHTH 560
                     59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.507135179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-22136181IPR003657WRKY domain
SuperFamilySSF1182901.23E-20138181IPR003657WRKY domain
SMARTSM007748.9E-24140195IPR003657WRKY domain
PfamPF031061.5E-19141181IPR003657WRKY domain
PROSITE profilePS5081124.409318382IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-29319382IPR003657WRKY domain
SuperFamilySSF1182904.84E-26321382IPR003657WRKY domain
SMARTSM007743.8E-36323381IPR003657WRKY domain
PfamPF031063.3E-25324380IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-33488563IPR003657WRKY domain
SuperFamilySSF1182902.62E-27495563IPR003657WRKY domain
PROSITE profilePS5081134.245498563IPR003657WRKY domain
SMARTSM007746.3E-35503562IPR003657WRKY domain
PfamPF031061.6E-23504560IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MADSMQTSFH KTPGYSGGAL RERIEARSGF SAPSLNTEDI FQSTCLTISS PGVSPATLLE  60
SPVFLSNPLP SPTTGKFLSL PSDKAKDELF DDITTSLAFQ SISGSSLDPT NNGLEPDDSQ  120
EYEQRQLCGL GDSMASGAPA DDGYNWRKYG QKLVKGSEYP RSYYKCTHPN CEAKKKVERL  180
SPVMADSMQT SFHKTPGYSG GALRERIEAR SGFSAPSLNT EDIFQSTCLT ISSPGVSPAT  240
LLESPVFLSN PLPSPTTGKF LSLPSDKAKD ELFDDITTSL AFQSISGSSL DPTNNGLEPD  300
DSQEYEQRQL CGLGDSMASG APADDGYNWR KYGQKLVKGS EYPRSYYKCT HPNCEAKKKV  360
ERSREGHIIE IIYTGSHNHP KPPPNRRSGI GSEQDGFAGT NENIDWTSPV SEVKYGSHSG  420
SMQVKSETQF GYGDAAADAF FRDEEEDDRT SHMSVSLSYD EEVDESESKR RKLEAYPAEM  480
SGSTRASREP RVVVQTTSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT ANGCTVTKHV  540
ERVSDDFKSV LTTYIGKHTH VVPAARNSSL VGSGSSGTLQ GGLATQTHNH NVVHYPVPHS  600
RSEGLVRANS SLFDLPPCLK PPAGFSVYIG QSELSDFSMP GLTIGQEKLP NQPMPDIGDP  660
AGVMLQLKAE PKVEPVSQQG LGLSASSLIY REIMSRLPQI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-30141564878Probable WRKY transcription factor 4
2lex_A2e-30141564878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g017960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526490.0AY052649.1 Arabidopsis thaliana WRKY transcription factor 34 (WRKY34) mRNA, complete cds.
GenBankBT0303610.0BT030361.1 Arabidopsis thaliana At4g26440 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087112.10.0PREDICTED: probable WRKY transcription factor 34
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLR0FAT40.0R0FAT4_9BRAS; Uncharacterized protein
STRINGXP_010438759.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]