PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g016750.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 302aa MW: 33367.2 Da PI: 8.9533

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g016750.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.8	1.8e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeel+v+yL++kv+g +++l +vi ++d+yk++PwdLp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s Csa11g016750.1 14 LPPGFRFYPTDEELLVQYLCRKVAGYHFSL-QVIGDIDLYKFDPWDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITS- 106 79*************************9.99***********8777899*******************************9999. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl Csa11g016750.1 107 DGRRVGIKKALVFYAGKAPKGTKTNWIMHEYRL 139 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-67	9	162	IPR003441	NAC domain
PROSITE profile	PS51005	61.187	14	162	IPR003441	NAC domain
Pfam	PF02365	6.4E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP 60 SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITSDGRR VGIKKALVFY 120 AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTSGSQRQA ASAATPVQAC 180 REEHSTNGSS SSSSSQLDDV LDSFPEIKDQ SFNLPRMNSL RTILNGNFDW ASLAGLNPIP 240 ELAPTNGLPS YGGYDSFRAA EGEAESGLRN SHVDNSGGLT QSFGYSSSGF GVSGQTFGFR 300 Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-107	1	168	7	174	NAC domain-containing protein 19
3swm_B	1e-107	1	168	7	174	NAC domain-containing protein 19
3swm_C	1e-107	1	168	7	174	NAC domain-containing protein 19
3swm_D	1e-107	1	168	7	174	NAC domain-containing protein 19
3swp_A	1e-107	1	168	7	174	NAC domain-containing protein 19
3swp_B	1e-107	1	168	7	174	NAC domain-containing protein 19
3swp_C	1e-107	1	168	7	174	NAC domain-containing protein 19
3swp_D	1e-107	1	168	7	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269\|PubMed:15319476}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g016750.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269\|PubMed:15319476, ECO:0000269\|Ref.7}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF083738	0.0	AF083738.1 Arabidopsis thaliana clone sps433 unknown mRNA.
GenBank	AY087772	0.0	AY087772.1 Arabidopsis thaliana clone 38344 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010438620.1	0.0	PREDICTED: NAC domain-containing protein 72-like
Swissprot	Q93VY3	0.0	NAC72_ARATH; NAC domain-containing protein 72
TrEMBL	A0A178UUP7	0.0	A0A178UUP7_ARATH; RD26
STRING	XP_010438620.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1435	27	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	0.0	NAC family protein

Publications ? help Back to Top
Zhu X, et al. Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] Li S, et al. The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence. Plant Cell Rep., 2016. 35(8): p. 1729-41 [PMID:27154758] Ye H, et al. RD26 mediates crosstalk between drought and brassinosteroid signalling pathways. Nat Commun, 2017. 8: p. 14573 [PMID:28233777]