PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g016030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 339aa    MW: 38266.4 Da    PI: 4.6512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g016030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20121171155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ kl+g
  Csa11g016030.1 121 KKYRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFSTAEEAAIVYDNAAIKLRG 171
                     59********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.99E-34121180No hitNo description
PROSITE profilePS5103223.709122179IPR001471AP2/ERF domain
PfamPF008478.5E-13122171IPR001471AP2/ERF domain
SMARTSM003802.6E-40122185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-30122179IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22122179IPR016177DNA-binding domain
PRINTSPR003671.3E-10123134IPR001471AP2/ERF domain
PRINTSPR003671.3E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMDEYMDFRP VKYTEHKTVI RKYTKKSSVE KKNKMSDGAA RDSSSSRLVR VCLIDRDATD  60
SSSDDEEFLF PRRRVKRLIN EIRVEPSSSP SSSSGDVSAS QTKDRKRLPV DPPPPPVQTQ  120
KKYRGVRQRP WGKWAAEIRD PEQRRRIWLG TFSTAEEAAI VYDNAAIKLR GPAALTNFAV  180
PPEPEPEPES NISVSTSESV DDSQHLSSPT SVLNYQTYVS EEALNDHVKP VKQEFLEPEQ  240
EPISWHLGQG NNNTNTDDSF PLDIPFLDNY FNESLPDISI FDQPMSPIHQ SSHNGFFNDL  300
VLFDSNYNTG ENCSSDIKEI GSMFNDLDDS LISDLLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21121178159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g016030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438528.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE30.0CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A178V2V50.0A0A178V2V5_ARATH; CRF4
STRINGXP_010438528.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-164cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]