PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa11g015790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 240aa MW: 26522.6 Da PI: 4.5006 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 14 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd++l+d+++ +G+g ++Ia++++ gRt++++k++w+++ Csa11g015790.1 14 KGPWTAEEDQKLIDYIRFHGPGtwrilpKNAAIAARLP-GRTDNEIKNHWNTH 65 79********************4444444468999999.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-23 | 5 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.3E-16 | 8 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.025 | 9 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-13 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 14 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.67E-15 | 16 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MGRSPCCDKN GVKKGPWTAE EDQKLIDYIR FHGPGTWRIL PKNAAIAARL PGRTDNEIKN 60 HWNTHIRKRL VRSGIDPVTH SPRLDLLDLS SLLGVIFNQQ NFSSVATHAS SLLNPDLLRL 120 ASLLLPLQNP NPTYASNVDQ NLQTPITSSE SSQPQTESTT PTNNNEINSS FEPMNPRLDD 180 VGLADVLPPL SESTFDLDSL MSTPMSSPQQ NSIEAEEANP SSFFDFGFPD DFILDDFMF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa11g015790.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL035524 | 1e-171 | AL035524.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T13J8 (ESSAII project). | |||
GenBank | AL161572 | 1e-171 | AL161572.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68. | |||
GenBank | AY519610 | 1e-171 | AY519610.1 Arabidopsis thaliana MYB transcription factor (At4g28110) mRNA, complete cds. | |||
GenBank | BT001930 | 1e-171 | BT001930.1 Arabidopsis thaliana clone C103440 putative myb family transcription factor (At4g28110) mRNA, complete cds. | |||
GenBank | CP002687 | 1e-171 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010438501.1 | 1e-137 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9M0J5 | 1e-120 | MYB41_ARATH; Transcription factor MYB41 | ||||
TrEMBL | D7MDM8 | 1e-126 | D7MDM8_ARALL; AtMYB41 | ||||
STRING | XP_010438501.1 | 1e-137 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28110.1 | 1e-82 | myb domain protein 41 |
Publications ? help Back to Top | |||
---|---|---|---|
|