PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g015760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 294aa    MW: 33701.4 Da    PI: 6.1722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g015760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18142192256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+g+
  Csa11g015760.1 142 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 192
                     59****999.**********954...4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.17E-34141201No hitNo description
SuperFamilySSF541714.9E-23142200IPR016177DNA-binding domain
PROSITE profilePS5103223.67142199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-32142200IPR001471AP2/ERF domain
SMARTSM003806.2E-38142205IPR001471AP2/ERF domain
PRINTSPR003672.7E-11143154IPR001471AP2/ERF domain
PfamPF008471.6E-13143192IPR001471AP2/ERF domain
PRINTSPR003672.7E-11165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDFDEELNLC ITKGKSIDHS LGEASSTSPR SMKKMKSPPN RPKPYLQSSS SPYSLGAFPF  60
YLDPTMQNQQ HQFGSYVPVE QQYDPTMQGQ KQMISFSPQQ QQQQQQQQYL VRYWRDTLNL  120
SPRGRMMMMN QEGVQPYSAT KLYRGVRQRQ WGKWVAEIRK PRSRARLWLG TFDTAEEAAM  180
AYDRQAFKLR GHNATLNFPE HFVNMENEVH DSNSSPHQKQ DETPQPSEVN LESKEVAVAD  240
NEREEGMAEA WYNAVTSGWG PESALWDDLD SSHQFSESSS SSSSLSCPMR PFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21141199160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g015760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438499.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
SwissprotQ9M0J31e-163ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLR0GTC61e-168R0GTC6_9BRAS; Uncharacterized protein
STRINGXP_010438499.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-153ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]