PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g015260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 33987.1 Da PI: 9.5335 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110 | 2.7e-34 | 59 | 200 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+Ptd+e++ e+L+ kv+++ + +++i+++d i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Csa11g015260.1 59 LPAGVKFDPTDQEVL-EHLEGKVKDDArklhplI--DDFIRTIDgengICYTHPEKLP-GVNKDGTVRHFFHRPSKAYTTGTRKRRKVHtdsevg 149 799**********99.99******9996665431..223444434445**********.677788899******************744345555 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ +g++ g kk+Lv+y g+++k+ekt+Wvmh+y+l Csa11g015260.1 150 gETRWHKTGKTRPVLA-GGRVRGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200 5778************.9*************6658999************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-38 | 53 | 219 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.046 | 59 | 219 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-15 | 60 | 200 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MTWCNDRSDV QTVERIIPSP TSAESPRASL PVSSHKTCPS CGHNFKFHEQ AGIHDLPGLP 60 AGVKFDPTDQ EVLEHLEGKV KDDARKLHPL IDDFIRTIDG ENGICYTHPE KLPGVNKDGT 120 VRHFFHRPSK AYTTGTRKRR KVHTDSEVGG ETRWHKTGKT RPVLAGGRVR GYKKILVLYT 180 NYGKQKKPEK TNWVMHQYHL GINEEEKEGE LVVSKVFYQT QPRQCGGSVA AAATAKDRPY 240 LHSLSGGGGR HLHYHLHQNN GNIKSNGGGG GTAGASEYYH NIPALISFNQ TGVQNHLVHD 300 SQPFIP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g015260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056658 | 0.0 | DQ056658.1 Arabidopsis thaliana no apical meristem family protein (At4g28500) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010438444.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 0.0 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A078HCI7 | 0.0 | A0A078HCI7_BRANA; BnaA01g08370D protein | ||||
TrEMBL | A0A398AJV5 | 0.0 | A0A398AJV5_BRACM; Uncharacterized protein | ||||
STRING | XP_010438444.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 0.0 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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