PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g015230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 305aa    MW: 34912.4 Da    PI: 6.296
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g015230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.7e-50101521129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                     lppGfrFhP+deelv++yL++k+++k+           e          + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nrat 
  Csa11g015230.1  10 LPPGFRFHPSDEELVCHYLCNKIRAKSdqgdvedD---EvdealkdatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRATI 101
                     79**********************99977665551...1555666653599*************87788999*********************** PP

             NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  Csa11g015230.1 102 SGYWKATGKDRTVMDPrTRQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                     ***************967778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-518156IPR003441NAC domain
PROSITE profilePS5100548.38610186IPR003441NAC domain
PfamPF023659.3E-2711151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDQGD VEDDEVDEAL KDATDLVEID  60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTR  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNIPPKL PPLLSSPPRH QQQEKMKIQV  180
CDQWEQLMKQ PSRTTEHPYH QHCLHQTVAC GWEQMIIGSL SSSSSHGPDH ESLLNLLYVD  240
NNSTVNITDD HHQNYEKILL SPDMTSLEHD KTCMGSSSDG GMVSDLHMEC GGLSFETDNL  300
LPFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-421015115140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g015230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0024620.0BT002462.1 Arabidopsis thaliana NAM / CUC2 -like protein (At4g28530) mRNA, complete cds.
GenBankBT0087410.0BT008741.1 Arabidopsis thaliana At4g28530 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438442.10.0PREDICTED: NAC domain-containing protein 21/22-like
TrEMBLR0F6070.0R0F607_9BRAS; Uncharacterized protein
STRINGXP_010438442.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-147NAC domain containing protein 74