PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g014910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 159aa    MW: 17909.4 Da    PI: 6.2679
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g014910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS58.21.8e-181157129290
            GRAS 129 lqaLa...sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrllde 216
                     +q+La    R++ + s+++T v++p s+  ++ el+ t+e+L+ fA e++vpfe+++l  + l +l ++ L++++  +Ea+a nl ++       
  Csa11g014910.1   1 MQELAsgrRRRNRASSFKLTDVAPPPSTisDEFELRFTEENLKTFAGEVKVPFEIELLSIELLLNLAYWPLSLRSseKEAIAMNLPINSGVSG-- 93 
                     899995423448899*********999999****************************999********999988668899999988655544.. PP

            GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                        l+  + ++L+   ++s     +++ e+ + +++F + +++al+y+++l++sl+a+   +++ ++++Er+++
  Csa11g014910.1  94 --YLPL-ILRFLNKSHQTS----SFAQTEVVTVTARFPNVVIHALQYHTTLLESLDAN---QNQGDSSIERFWV 157
                     ..3333.224555555554....589999999*************************9...7899999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.2591158IPR005202Transcription factor GRAS
PfamPF035146.0E-161157IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MQELASGRRR RNRASSFKLT DVAPPPSTIS DEFELRFTEE NLKTFAGEVK VPFEIELLSI  60
ELLLNLAYWP LSLRSSEKEA IAMNLPINSG VSGYLPLILR FLNKSHQTSS FAQTEVVTVT  120
ARFPNVVIHA LQYHTTLLES LDANQNQGDS SIERFWVR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g014910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546051e-154AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_182041.15e-73GRAS family transcription factor
SwissprotQ7XJM84e-74SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A384KUR01e-71A0A384KUR0_ARATH; LOM1
TrEMBLB7ZWR81e-71B7ZWR8_ARATH; At2g45160
STRINGAT2G45160.12e-72(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.14e-62GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]