PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g014890.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 563aa MW: 60634.9 Da PI: 6.0452

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g014890.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	24.2	3.7e-08	400	457	154	209
GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlq 209 + el+ t+e+L+ fA e++vpfe+++l + l +l ++ L++++ +Ea+a nl ++ Csa11g014890.1 400 XEFELRFTEENLKTFAGEVKVPFEIELLSIELLLNLAYWPLSLRSseKEAIAMNLPIN 457 5789**********************999******9998887799999999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.3430.10	6.7E-116	47	402	IPR029020	Ammonium/urea transporter
SuperFamily	SSF111352	3.14E-97	48	402	IPR024041	Ammonium transporter AmtB-like domain
TIGRFAMs	TIGR00836	5.4E-124	51	417	IPR001905	Ammonium transporter
Pfam	PF00909	2.5E-116	54	410	IPR024041	Ammonium transporter AmtB-like domain
PROSITE pattern	PS01219	0	206	231	IPR018047	Ammonium transporter, conserved site
Pfam	PF03514	1.3E-5	400	457	IPR005202	Transcription factor GRAS
Gene3D	G3DSA:1.10.3430.10	6.7E-116	509	537	IPR029020	Ammonium/urea transporter

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0072488	Biological Process	ammonium transmembrane transport
GO:0016020	Cellular Component	membrane
GO:0008519	Molecular Function	ammonium transmembrane transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MAGSLSCSAS DLIPLLSGGA NATAAAAAAE YICGRFDTVA GKFTDAAYAI DNTYLLFSAY 60 LVFAMQLGFA MLCAGSVRAK NTMNIMLTNV IDAAAGGLFY YLFGFAFAYG SPSNGFIGKH 120 FFGMNDFPKP SFDYPYFLYQ WTFAIAAAGI TSGSIAERTQ FVAYLIYSSF LTGLVYPIVS 180 HWFWSSDGWA SPARSENLLF QSGVIDFAGS GVVHMVGGIA GLWGAYIEGP RIGRFGHSGK 240 PVTLRGHSAT LVVLGTFLLW FGWYGFNPGS FATIFKSYGG SPGNSFYGQW SAVGRTAVTT 300 TLAGCSAALT TLFGKRLIDG YWNVTDVCNG LLGGFAAITS GCSVVEPWAA LICGFVAAWV 360 LMGFNKLADK LEFDDPLEAA QLHGGCGAWG IIFTGLFAEX EFELRFTEEN LKTFAGEVKV 420 PFEIELLSIE LLLNLAYWPL SLRSSEKEAI AMNLPINSGV SGYLPLILRF LNKSHQTSSF 480 AQTEVVTVTA RFPNVXKRYV AEIFGGDPNR PYGLLMGGGG RLLAAHVVQI LVITGWYHTT 540 LLESLDANQN QGDSSIERFW VR*

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MAGSLSCSAS DLIPLLSGGA NATAAAAAAE YICGRFDTVA GKFTDAAYAI DNTYLLFSAY  60
LVFAMQLGFA MLCAGSVRAK NTMNIMLTNV IDAAAGGLFY YLFGFAFAYG SPSNGFIGKH  120
FFGMNDFPKP SFDYPYFLYQ WTFAIAAAGI TSGSIAERTQ FVAYLIYSSF LTGLVYPIVS  180
HWFWSSDGWA SPARSENLLF QSGVIDFAGS GVVHMVGGIA GLWGAYIEGP RIGRFGHSGK  240
PVTLRGHSAT LVVLGTFLLW FGWYGFNPGS FATIFKSYGG SPGNSFYGQW SAVGRTAVTT  300
TLAGCSAALT TLFGKRLIDG YWNVTDVCNG LLGGFAAITS GCSVVEPWAA LICGFVAAWV  360
LMGFNKLADK LEFDDPLEAA QLHGGCGAWG IIFTGLFAEX EFELRFTEEN LKTFAGEVKV  420
PFEIELLSIE LLLNLAYWPL SLRSSEKEAI AMNLPINSGV SGYLPLILRF LNKSHQTSSF  480
AQTEVVTVTA RFPNVXKRYV AEIFGGDPNR PYGLLMGGGG RLLAAHVVQI LVITGWYHTT  540
LLESLDANQN QGDSSIERFW VR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6eu6_A	2e-39	50	404	8	347	Ammonium transporter
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	High affinity ammonium transporter in the plasma membrane. {ECO:0000269\|PubMed:19073648}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g014890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL035353	0.0	AL035353.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F16A16 (ESSAII project).
GenBank	AL161573	0.0	AL161573.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	DQ056659	0.0	DQ056659.1 Arabidopsis thaliana putative ammonium transporter (At4g28700) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010445079.1	0.0	PREDICTED: ammonium transporter 1 member 4-like
Swissprot	Q9SVT8	0.0	AMT14_ARATH; Ammonium transporter 1 member 4
TrEMBL	R0GPT1	0.0	R0GPT1_9BRAS; Ammonium transporter
STRING	XP_010445079.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45160.1	4e-36	GRAS family protein

Publications ? help Back to Top
Mantelin S, et al. Nitrate-dependent control of root architecture and N nutrition are altered by a plant growth-promoting Phyllobacterium sp. Planta, 2006. 223(3): p. 591-603 [PMID:16160849] Bock KW, et al. Integrating membrane transport with male gametophyte development and function through transcriptomics. Plant Physiol., 2006. 140(4): p. 1151-68 [PMID:16607029] Yuan L, et al. The organization of high-affinity ammonium uptake in Arabidopsis roots depends on the spatial arrangement and biochemical properties of AMT1-type transporters. Plant Cell, 2007. 19(8): p. 2636-52 [PMID:17693533] Yuan L, et al. AtAMT1;4, a pollen-specific high-affinity ammonium transporter of the plasma membrane in Arabidopsis. Plant Cell Physiol., 2009. 50(1): p. 13-25 [PMID:19073648]