PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g012380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 314aa    MW: 33427.3 Da    PI: 7.0054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g012380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11141186555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Csa11g012380.1 141 HSIAERLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 186
                     99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-13134190No hitNo description
PROSITE profilePS5088817.301136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16138195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9141186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNSSSLLTPS SSSSPHLQSP ATFDHDDFLH HIFSSTPWPS SVLDEAPPPT PDCTAVLGFH  60
HHDIDSRNQI TMIPLSHNHP NDALFNGFST RSLPFHLPQG SGGQTQSQSQ ATASTTTGGT  120
TAPTQTKPKV RARRGQATDP HSIAERLRRE RIAERMKSLQ ELVPNGNKTD KASMLDEIID  180
YVKFLQLQVK VLSMSRLGGA ASVSSQISED AGGSHENTSS SGENQTAKMT EHQVAKLMEE  240
DMGSAMQYLQ GKGLCLMPIS LATTISTATC PSRNPFVKDT GVPLSPNLST TTIANGSGSS  300
LVTVKDAPTV SKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g012380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886010.0AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438099.10.0PREDICTED: transcription factor bHLH69 isoform X1
RefseqXP_010438100.10.0PREDICTED: transcription factor bHLH69 isoform X2
SwissprotQ8S3D50.0BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A1P8B7F00.0A0A1P8B7F0_ARATH; LJRHL1-like 2
TrEMBLA0A384LMW20.0A0A384LMW2_ARATH; LRL2
TrEMBLC0SVK80.0C0SVK8_ARATH; Uncharacterized protein At4g30980 (Fragment)
STRINGXP_010438100.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-169LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]