PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g011740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 489aa MW: 54655.9 Da PI: 7.5025 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.9 | 3.7e-18 | 2 | 73 | 18 | 96 |
--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 18 lpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +p kf++eh g+ + + + l + s ++W+vk+ ++++ lt+GWk+Fv+a++L++gDfvvF+++g++ f +v++ Csa11g011740.1 2 IPVKFFSEHivGKHEGR--SVNLVSdASEKTWKVKM--EGHR----LTDGWKQFVEAHDLRVGDFVVFRHEGDMLF--HVTA 73 9********86555444..5665554999*******..6666....***********************9998888..6665 PP | |||||||
2 | B3 | 72.8 | 4.1e-23 | 122 | 216 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + ++ ++l+++ +++p +fa+++g++ke++ +++l++ +g+sWe ++ +++ r + +GW +F++an+L++gD+++F+l ++ +++v+k++ Csa11g011740.1 122 SLSVTDSNLSRDTVCVPINFARRYGLDKERQ-EIVLMNNEGKSWESVVKSWGGC-RLSIVRGWTSFCNANKLEVGDTCTFRLLPNTAETPVFKLC 214 55678999*******************9875.****************888885.788999*********************9999999*****9 PP -S CS B3 98 rk 99 ++ Csa11g011740.1 215 SR 216 87 PP | |||||||
3 | B3 | 45.2 | 1.6e-14 | 239 | 332 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++ ++l +g lp +f++++ +++++ +++l d++ +W +kl+++k+ + ++ ++GWk+F+ an++ +g++++++l++ ++ ++ Csa11g011740.1 239 FVKLTLTRNSLHLGKQHLPVSFTRNNRLINPG--KIILVDKNRAEWPMKLNVDKSTRLmyIISGNGWKSFCAANEIGAGESLTLELIQ-GGKIPL 330 788999999999999***********999655..7***************887777666444569********************998.444455 PP EE CS B3 94 vk 95 +k Csa11g011740.1 331 LK 332 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.677 | 1 | 77 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-21 | 1 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-12 | 2 | 69 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-12 | 2 | 77 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.23E-17 | 2 | 72 | No hit | No description |
SuperFamily | SSF101936 | 7.85E-19 | 2 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-21 | 115 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.53E-21 | 116 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.89E-19 | 120 | 210 | No hit | No description |
PROSITE profile | PS50863 | 14.593 | 120 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-22 | 121 | 216 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.2E-25 | 121 | 217 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-17 | 236 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-15 | 237 | 334 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.13E-16 | 238 | 326 | No hit | No description |
Pfam | PF02362 | 7.6E-14 | 239 | 333 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-25 | 239 | 337 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.887 | 239 | 336 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
NIPVKFFSEH IVGKHEGRSV NLVSDASEKT WKVKMEGHRL TDGWKQFVEA HDLRVGDFVV 60 FRHEGDMLFH VTALGSSCCE IQYAQPHCHE EDEEINETEI SSRSEKHVEE NVKTESDLNC 120 FSLSVTDSNL SRDTVCVPIN FARRYGLDKE RQEIVLMNNE GKSWESVVKS WGGCRLSIVR 180 GWTSFCNANK LEVGDTCTFR LLPNTAETPV FKLCSRIMSE RIVQSAEGCI DGKTGGNRFV 240 KLTLTRNSLH LGKQHLPVSF TRNNRLINPG KIILVDKNRA EWPMKLNVDK STRLMYIISG 300 NGWKSFCAAN EIGAGESLTL ELIQGGKIPL LKFVSKMEQP PVEAEARKRK RARVKRWSQE 360 TEPNVEMREK AAEELGEPSR ASHKSSGNPE NLQHTQACSV SNQVAKVKQS VVDALTSVKR 420 FMAELETTEQ KLEISLQEIN NLERGEDNGN KTSSSSKPGE TSVKGQPTSE KQSTLPVLPT 480 EYGPLLAA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 345 | 351 | ARKRKRA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g011740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445032.1 | 0.0 | PREDICTED: B3 domain-containing protein REM8-like | ||||
Swissprot | Q8H2D1 | 0.0 | REM8_ARATH; B3 domain-containing protein REM8 | ||||
TrEMBL | D7MB41 | 0.0 | D7MB41_ARALL; Uncharacterized protein | ||||
STRING | XP_010445032.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 0.0 | B3 family protein |
Publications ? help Back to Top | |||
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