PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g011650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 804aa MW: 91079.4 Da PI: 9.6005 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.3 | 1.1e-21 | 88 | 183 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f v +++++lk++ + lpkk a++ ++ +++ ++l +e+g+sW+++l++r ++g+y++++GWk+F+++n+ kegD + F l+g+ e ++++ + Csa11g011650.1 88 FVVNVTASNLKTDTINLPKKAASSKALSRRCD-NIILVNEEGNSWTLNLRFRESDGSYYMGGGWKRFCSENKQKEGDLIAFNLVGDGESNPMLCI 181 5678899***************9999997776.*****************************************************9999****9 PP E- CS B3 97 fr 98 ++ Csa11g011650.1 182 CS 183 97 PP | |||||||
2 | B3 | 36.3 | 9.7e-12 | 287 | 357 | 18 | 95 |
--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 18 lpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +p +f+ +h g +e+kt +l++ s +We+k+ +++++ l GWkeF++a++ + gD++vF+++g +f ++v+ Csa11g011650.1 287 IPVTFFLKHlqGR--NEHKTAKLRTgASDTVWELKI--EGGRR---LH-GWKEFARAHDFRIGDVIVFRHEG--DFVFHVT 357 999**99**7443..47789999997888*******..77764...55.********************766..5644665 PP | |||||||
3 | B3 | 53.6 | 4.1e-17 | 415 | 506 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ ++l+++ +++p +fa+++g k+++ +++l +e grsW++ l ++k++ +++l+ GW++F++ang++ g +Fkl++ +++++v++++++ Csa11g011650.1 415 NVSVSNLQEDKVYVPMSFARSNGWTKACG-KVVLLNEMGRSWNLSLDHDKSGIKTYLRHGWRSFCNANGMNRGGH-TFKLVQ-NSGTPVIRLCQA 506 56678889999***********9999998.****************999*9999*****************9985.999998.77779*999975 PP | |||||||
4 | B3 | 74 | 1.7e-23 | 526 | 617 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++++++ l+lpk f++++g++k + +++l++e gr+W++ l++rk+ +++v+++GW+ F++ ngLk++D++ Fkl++ +++++v+ ++ Csa11g011650.1 526 LTPSSFNNDALYLPKGFVSSNGLNKDCCDEMVLKNEYGRTWNLVLRHRKSNNTVVMSRGWRCFCEVNGLKARDSFKFKLVR-TGARPVLCLCP 617 4677888888********************************************************************998.88889998886 PP | |||||||
5 | B3 | 57.8 | 2e-18 | 703 | 799 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f++ ++++++ + + l+lp +f++ +g+kk++ ++tl +++g v+l + gr l+kGWk+F++a+++k g+++v++l++++++++v+k Csa11g011650.1 703 FVTLTITPYSYRDNKLRLPLHFTRVNGIKKPG--KITLLSQDGVNQMVRLLKDHDNGRLRLGKGWKGFCQAHNVKIGESFVLELIWKKDASPVLK 795 788899********************999766..8***************99999999************************************* PP EE-S CS B3 96 vfrk 99 ++ k Csa11g011650.1 796 FCTK 799 9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-6 | 8 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-18 | 82 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.61E-18 | 86 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.70E-17 | 87 | 183 | No hit | No description |
PROSITE profile | PS50863 | 14.522 | 87 | 185 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-23 | 88 | 185 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-20 | 88 | 184 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.245 | 210 | 283 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.88E-9 | 218 | 293 | No hit | No description |
SuperFamily | SSF101936 | 8.24E-9 | 218 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-7 | 218 | 293 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-8 | 220 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.2E-11 | 277 | 362 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-13 | 287 | 372 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.418 | 287 | 362 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.29E-9 | 287 | 357 | No hit | No description |
SuperFamily | SSF101936 | 3.14E-13 | 287 | 369 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-18 | 404 | 508 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-16 | 407 | 511 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.76E-13 | 411 | 504 | No hit | No description |
PROSITE profile | PS50863 | 12.055 | 411 | 507 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-18 | 412 | 507 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-16 | 414 | 506 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-21 | 514 | 617 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-22 | 517 | 621 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.67E-19 | 521 | 617 | No hit | No description |
PROSITE profile | PS50863 | 14.085 | 521 | 619 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-29 | 522 | 619 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-22 | 526 | 618 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-19 | 695 | 799 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.47E-19 | 697 | 798 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.6E-26 | 703 | 800 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-18 | 703 | 799 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.98E-16 | 703 | 788 | No hit | No description |
PROSITE profile | PS50863 | 13.169 | 703 | 800 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 804 aa Download sequence Send to blast |
MVNSLFQSPA NPHFFQPLLP GSETHLTIPV IFFSKHIDGK HEQKTAKLKS DSSEKTWEVK 60 MDGRNGLRKR NLNPKREAES FESWDYCFVV NVTASNLKTD TINLPKKAAS SKALSRRCDN 120 IILVNEEGNS WTLNLRFRES DGSYYMGGGW KRFCSENKQK EGDLIAFNLV GDGESNPMLC 180 ICSSYMGSFT IISRTKQICH SESHKLQYQK LQTCKLVDHD KRKVFTLPVE FTKINGINNN 240 HKKIILEDKH GVKRLIKLVR DGPNYGRRGL GKGWKLFCKA NDVLKNIPVT FFLKHLQGRN 300 EHKTAKLRTG ASDTVWELKI EGGRRLHGWK EFARAHDFRI GDVIVFRHEG DFVFHVTALG 360 LNSCEIEYST SSRSIDDDRD NHQDNIEIRP MKKRVKKNPR REEDSSSEHS CFVANVSVSN 420 LQEDKVYVPM SFARSNGWTK ACGKVVLLNE MGRSWNLSLD HDKSGIKTYL RHGWRSFCNA 480 NGMNRGGHTF KLVQNSGTPV IRLCQAGCKP DAESSSSDCS YFAGSLTPSS FNNDALYLPK 540 GFVSSNGLNK DCCDEMVLKN EYGRTWNLVL RHRKSNNTVV MSRGWRCFCE VNGLKARDSF 600 KFKLVRTGAR PVLCLCPAET KRDTKVVECS EGRDVDSLST DPSSGEESSE TEESEVKKNI 660 KDKGRDNNMF KEDSEEESIE DNIEKEKHCS RPGASSSSSQ SRFVTLTITP YSYRDNKLRL 720 PLHFTRVNGI KKPGKITLLS QDGVNQMVRL LKDHDNGRLR LGKGWKGFCQ AHNVKIGESF 780 VLELIWKKDA SPVLKFCTKS NSV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g011650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010438003.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like | ||||
TrEMBL | R0F4H1 | 0.0 | R0F4H1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010438003.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5781 | 16 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 1e-122 | B3 family protein |