PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa11g010290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 307aa MW: 34215 Da PI: 4.8484 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.5 | 1.6e-17 | 200 | 234 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Csa11g010290.1 200 CLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRL 234 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 6.4E-106 | 1 | 290 | IPR016679 | Transcription factor, GATA, plant |
SuperFamily | SSF57716 | 2.66E-15 | 193 | 256 | No hit | No description |
PROSITE profile | PS50114 | 12.044 | 194 | 230 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.7E-17 | 194 | 244 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.2E-14 | 197 | 232 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.04E-14 | 199 | 246 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 200 | 225 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.6E-15 | 200 | 234 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MERLASELFL VAGNPDSFVV DDLLDFSNDD GQTDDGFDTL LPDSSSVSTV TLADSSNSSS 60 SVFTDSTGFS HDLYIPSEDL AELEWLSNIV EETFSEEDQD KLHLLSGLKN PQTIGSTQTH 120 LIKPEPEPDF DQFIDTDESN VAVPAKARSK RSRSAASTWA SRLLSLADSD ESSPKKKQRR 180 VNEQDMAVEM DVDCGGGRRC LHCATEKTPQ WRTGPMGPKT LCNACGVRYK SGRLVPEYRP 240 ASSPTFVMAR HSNSHRKVME LRRQKEMRDE HMLSQLRCEN LMMDIRSNGE DFLIHNHVAS 300 GFRHLI* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 173 | 179 | PKKKQRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00048 | PBM | Transfer from AT4G32890 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa11g010290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437836.1 | 0.0 | PREDICTED: GATA transcription factor 9-like | ||||
Swissprot | O82632 | 0.0 | GATA9_ARATH; GATA transcription factor 9 | ||||
TrEMBL | D7M9N0 | 0.0 | D7M9N0_ARALL; GATA transcription factor | ||||
TrEMBL | R0H0E9 | 0.0 | R0H0E9_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010437836.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5682 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32890.1 | 1e-158 | GATA transcription factor 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|