PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g009690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 29514.8 Da PI: 10.0557 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 24 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed+ l ++v+q+G+++W+ Ia+++ gR++k+c++rw++ Csa11g009690.1 24 RGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 69 899****************************9.************96 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.5e-18 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eE+e+l++a++ G++ W++Iar ++ gRt++++k++++ Csa11g009690.1 76 KKPFTEEEEERLLKAHRIQGNR-WASIARLFP-GRTDNSVKNHFHV 119 689*******************.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.487 | 19 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-29 | 22 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-14 | 23 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 25 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.3E-16 | 27 | 87 | No hit | No description |
CDD | cd00167 | 4.40E-13 | 27 | 68 | No hit | No description |
SMART | SM00717 | 7.2E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.609 | 75 | 125 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 78 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.61E-11 | 78 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEIASMEMSR GSNSFDNKKP SCQRGHWRPV EDDNLRQLVE QYGPKNWNFI AQHLYGRSGK 60 SCRLRWYNQL DPNITKKPFT EEEEERLLKA HRIQGNRWAS IARLFPGRTD NSVKNHFHVI 120 MARRKRENLS STATSTFSQT WHNVLSPSSS VTRLNRSQFG LWRYQKDKRR GLWPCSFVPS 180 PGNDQFGSSS VSNVRHEVLL ERRTSKELVD HHNHTFHEAT PDNNKTSGED GPSMENDVEK 240 NNVTFIDFLG VGLTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-34 | 20 | 124 | 3 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g009690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY142517 | 0.0 | AY142517.1 Arabidopsis thaliana putative transcription factor (At4g33450) mRNA, complete cds. | |||
GenBank | AY519611 | 0.0 | AY519611.1 Arabidopsis thaliana MYB transcription factor (At4g33450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437762.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
TrEMBL | D7M8R2 | 1e-166 | D7M8R2_ARALL; AtMYB69 | ||||
STRING | XP_010437762.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10133 | 20 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33450.1 | 1e-165 | myb domain protein 69 |