PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g006520.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 966aa MW: 107539 Da PI: 6.2559

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g006520.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	641	691	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Csa11g006520.2 641 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 691 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	630	711	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	644	691	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.69E-24	858	950	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.0E-25	862	946	No hit	No description
PROSITE profile	PS51745	29.794	864	947	IPR000270	PB1 domain
SMART	SM00666	1.8E-28	864	947	IPR000270	PB1 domain
Pfam	PF00564	3.3E-18	866	946	IPR000270	PB1 domain
CDD	cd06407	2.08E-41	866	946	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 966 aa Download sequence Send to blast
MEGGGGGGGD GSFLPNSSFG VFSETAMDMD FMEELFYDGC WLETTDGKSL KQTLGQQVSD 60 STTMSDNNNN SFLYGYQFAE NPSQDHISNE ETGRKFPPIT PGFLKIEDLS NQPLNQVPFD 120 QSAAMSSAQA EKFLLEETEG GRRWWIAPRT SQGPSSSVKD RLVQAIKGLM QDKDFLIQIW 180 VPIQQEGKNF LTTLEQPHFF NPKYLSLKRY RDVSVAYNFP AHEDSTESVG LPGRVFLGKL 240 PEWTPDVRFF RSDEYPRIKE AEKCDVRGSL ALPVFERGSG TCLGVVEIVT TTQKMNYRPE 300 LDNICKALES VNLRSSRNLK SPSREFLQVY NEFYYAALPE VSEFLTWVCR LYDLPLALTW 360 APCARQGKVG SRHSDENFSE CVSTVDDACI VPDHQSRNFL EACSEHHLLQ GEGIVGKAFK 420 ATKLFFVPEV ITFSKTNYPL AHHAKISGLH AALAVPLKSK FNGSVEFVLE FFFPKTCLDT 480 EAQQDMLKSL SVTLQQDFRS LNLVIDKELE LEVVFPVREE VVFGETGENM KPLPLEEISQ 540 EDSSWISHMI KANEKGKGVS LSWEYQKEEP KEEFMLTSGW DNNQIGSGHS NFISETDQFQ 600 KVSNSGLRID MDPSFESASF GVGQTLLGSR RPGEKRRTKT EKTIGLEVLR QYFAGSLKDA 660 AKSIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLKKLQL VIDSVQGVQG SIQLDSFYTS 720 FPELSSPHMS GTGTTFKNTD QSRNVTAQTE NGVSAQGTAA AAPKSPPSSS CSHSSGSSTC 780 CSTGANQSSN TGNTSNTVTT LMAENASAIL KRARSEVRLH TMNQEETKSL SRTLSHKTFS 840 EHPLFENLPR LPESNRRKLK AEGASKVKAT FGEAKVRFTL LPTWGFRELQ HEIARRFNID 900 NIAPFDLKYL DDDKEWVLLT CEADLEECID IYRSSQSRTI KISVHEASQN KLGGSFGSIG 960 LGPSL*

Sequence ? help Back to Top

Protein Sequence Length: 966 aa Download sequence Send to blast

MEGGGGGGGD GSFLPNSSFG VFSETAMDMD FMEELFYDGC WLETTDGKSL KQTLGQQVSD  60
STTMSDNNNN SFLYGYQFAE NPSQDHISNE ETGRKFPPIT PGFLKIEDLS NQPLNQVPFD  120
QSAAMSSAQA EKFLLEETEG GRRWWIAPRT SQGPSSSVKD RLVQAIKGLM QDKDFLIQIW  180
VPIQQEGKNF LTTLEQPHFF NPKYLSLKRY RDVSVAYNFP AHEDSTESVG LPGRVFLGKL  240
PEWTPDVRFF RSDEYPRIKE AEKCDVRGSL ALPVFERGSG TCLGVVEIVT TTQKMNYRPE  300
LDNICKALES VNLRSSRNLK SPSREFLQVY NEFYYAALPE VSEFLTWVCR LYDLPLALTW  360
APCARQGKVG SRHSDENFSE CVSTVDDACI VPDHQSRNFL EACSEHHLLQ GEGIVGKAFK  420
ATKLFFVPEV ITFSKTNYPL AHHAKISGLH AALAVPLKSK FNGSVEFVLE FFFPKTCLDT  480
EAQQDMLKSL SVTLQQDFRS LNLVIDKELE LEVVFPVREE VVFGETGENM KPLPLEEISQ  540
EDSSWISHMI KANEKGKGVS LSWEYQKEEP KEEFMLTSGW DNNQIGSGHS NFISETDQFQ  600
KVSNSGLRID MDPSFESASF GVGQTLLGSR RPGEKRRTKT EKTIGLEVLR QYFAGSLKDA  660
AKSIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLKKLQL VIDSVQGVQG SIQLDSFYTS  720
FPELSSPHMS GTGTTFKNTD QSRNVTAQTE NGVSAQGTAA AAPKSPPSSS CSHSSGSSTC  780
CSTGANQSSN TGNTSNTVTT LMAENASAIL KRARSEVRLH TMNQEETKSL SRTLSHKTFS  840
EHPLFENLPR LPESNRRKLK AEGASKVKAT FGEAKVRFTL LPTWGFRELQ HEIARRFNID  900
NIAPFDLKYL DDDKEWVLLT CEADLEECID IYRSSQSRTI KISVHEASQN KLGGSFGSIG  960
LGPSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g006520.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL022604	0.0	AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBank	AL161587	0.0	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010437496.1	0.0	PREDICTED: protein NLP2
Refseq	XP_010437497.1	0.0	PREDICTED: protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	R0GGQ7	0.0	R0GGQ7_9BRAS; Uncharacterized protein
STRING	XP_010437496.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein