PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g006210.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 505aa    MW: 56484.8 Da    PI: 5.0637
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g006210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.52.5e-44111315127
             NAM  15 vveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107
                     v++yL+ k++g++ ++ +vi+++d++k+ePwdLp+   +k+++ ew+fF++rd+ky++g+r+nrat+sgyWkatgkd++++s k++l+g+kktLv
  Csa11g006210.1   1 VNHYLRLKINGRHSDV-RVIPDIDVCKWEPWDLPAlsVIKTDDPEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKS-KKTLIGMKKTLV 93 
                     789**********999.99***************4447888889**************************************.999********* PP

             NAM 108 fykgrapkgektdWvmheyr 127
                     fy+grapkge+t+W+mheyr
  Csa11g006210.1  94 FYRGRAPKGERTNWIMHEYR 113
                     *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100548.6381137IPR003441NAC domain
SuperFamilySSF1019414.18E-521137IPR003441NAC domain
PfamPF023651.6E-191113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
VNHYLRLKIN GRHSDVRVIP DIDVCKWEPW DLPALSVIKT DDPEWFFFCP RDRKYPNGHR  60
SNRATDSGYW KATGKDRSIK SKKTLIGMKK TLVFYRGRAP KGERTNWIMH EYRPTLKDLD  120
GTGPGQSPFV LCRLFHKPDD RVNGVKSDEP APTSCKYSPD DTSSDLVQET PSSDAAVEKP  180
SDYSGGCGYA QSMADGSMTE VREENLWLSC DLEDQRALPP RMDSTYAGDF GYDEIGFQFQ  240
DGTSEPDVSL TELLEEVFNN PDDFSCEESI SRENPVAPNG IFSSDKMLQS AAPEDVYFND  300
FMAYTDADAE MVQLQYGLDH GASGWPKDAV SAYPATTNSY YGDILQPDQV TSHNTENNVT  360
EGRGIKIRGR QPQNRSSTGL INQGIAPRRI RLQVHSSSVP PDDKNQIEAK QREEVNEGLT  420
DIPEDKEVAA KDSERSDSVV KPQIKLRTRG TIGQVKADRV ADDEVQVESR RRRREGKQWK  480
LVATVIVAVM VGVGVGMWRK LVGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-35313733165NO APICAL MERISTEM PROTEIN
1ut4_B4e-35313733165NO APICAL MERISTEM PROTEIN
1ut7_A4e-35313733165NO APICAL MERISTEM PROTEIN
1ut7_B4e-35313733165NO APICAL MERISTEM PROTEIN
3swm_A4e-35313736168NAC domain-containing protein 19
3swm_B4e-35313736168NAC domain-containing protein 19
3swm_C4e-35313736168NAC domain-containing protein 19
3swm_D4e-35313736168NAC domain-containing protein 19
3swp_A4e-35313736168NAC domain-containing protein 19
3swp_B4e-35313736168NAC domain-containing protein 19
3swp_C4e-35313736168NAC domain-containing protein 19
3swp_D4e-35313736168NAC domain-containing protein 19
4dul_A4e-35313733165NAC domain-containing protein 19
4dul_B4e-35313733165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g006210.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0311351e-161AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBankAL1615871e-161AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026871e-161CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437454.10.0PREDICTED: protein NTM1-like 9 isoform X1
SwissprotF4JN350.0NTL9_ARATH; Protein NTM1-like 9
TrEMBLR0H2V40.0R0H2V4_9BRAS; Uncharacterized protein
STRINGXP_010437454.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.10.0NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]