PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g005420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | SRS | ||||||||
Protein Properties | Length: 324aa MW: 34564.6 Da PI: 6.5738 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 224.4 | 2.2e-69 | 92 | 249 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsst 89 rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + ++ +kr+r++ + ++ss+ Csa11g005420.1 92 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSgsggtggGSSIPKRHRDT--TLPGTSSSS 184 67899*****************************************************99988877789998888889999986..888899999 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +l+s ++ e+ +s+P evss+a+frcv++s vddg+ ++aYqt+v+igGh+fkGiLydqG+e+ Csa11g005420.1 185 RLPSDSAGLEMGEASFPGEVSSDALFRCVKMSDVDDGDGQYAYQTTVNIGGHLFKGILYDQGPES 249 ***************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.3E-62 | 95 | 248 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.2E-27 | 97 | 139 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Gene3D | G3DSA:2.30.27.10 | 3.7E-4 | 126 | 184 | No hit | No description |
TIGRFAMs | TIGR01624 | 1.1E-28 | 200 | 247 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MAGIFSLGGN NNNNNGDEEE ENQQQQKTNW IWYRPNANTN NINPSSSQQI WQIPPEQMLM 60 HHHPHPQQQQ QQSLDLYPGH QIDVSDLATS SRSITISCRD CGNQAKKDCT HMRCRTCCKS 120 RGFDCSTHVR STWIPVARRR ERQQQLHMST SGGGGGSGSG GTGGGSSIPK RHRDTTLPGT 180 SSSSRLPSDS AGLEMGEASF PGEVSSDALF RCVKMSDVDD GDGQYAYQTT VNIGGHLFKG 240 ILYDQGPESS YMSAGSGGSD HQSSSAGGGG GNPFNPPIVA DGGGGVSSAM FVDPNSGGYY 300 SSNMTTSVFM PPGTQFYQNP PRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g005420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437361.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 2-like | ||||
Swissprot | O65517 | 1e-169 | SRS2_ARATH; Protein SHI RELATED SEQUENCE 2 | ||||
TrEMBL | R0F6A6 | 1e-178 | R0F6A6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010437361.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13648 | 17 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36260.1 | 1e-158 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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