PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g005190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 161aa MW: 18274.6 Da PI: 9.9392 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.3 | 3.5e-22 | 5 | 50 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+ n qvtfskRr g++KKA+EL++LC+ae+++i+fs+ gk++ + Csa11g005190.1 5 RNEKNLQVTFSKRRFGLFKKASELCTLCGAEILMIVFSPAGKVFSF 50 6899***************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.025 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.3E-25 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.76E-21 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-24 | 6 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-10 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-10 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MKKRRNEKNL QVTFSKRRFG LFKKASELCT LCGAEILMIV FSPAGKVFSF GHPGVLAKQE 60 KAEHNRMALD MVKQSRKQRG ICWYEKDVKE LDLTEIDDLI GALQDIRKKL LSLVVVVMLM 120 LAALICLIKE WNTFNNNPII GYPNQTPLFG YNNDAIIIQS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g005190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010432164.1 | 3e-75 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q4PSU4 | 2e-24 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q9FKK2 | 3e-24 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | D7MBG3 | 6e-57 | D7MBG3_ARALL; Uncharacterized protein | ||||
STRING | XP_010432164.1 | 1e-74 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14294 | 10 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 8e-52 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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