PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g005170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21651.1 Da    PI: 10.1242
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g005170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.42.8e-211562249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + +n+ n qvtfskRr g++KK +EL++LC+ae+++i+fs++gk++ +
  Csa11g005170.1 15 KMKNEKNLQVTFSKRRFGLFKKVSELCTLCGAEILMIVFSPSGKVFSF 62
                    679******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-31665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.268666IPR002100Transcription factor, MADS-box
CDDcd002656.92E-34783No hitNo description
PRINTSPR004043.5E-18828IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-26893IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231562IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVKSNKGGQK IEMKKMKNEK NLQVTFSKRR FGLFKKVSEL CTLCGAEILM IVFSPSGKVF  60
SFGHPGVREL IYRFTNFTDN SLIPHQPNNN QLVESRPDRN VQYLKEMLAH VLAKQKKAEH  120
NRMTLDMVKQ SREQRRICWY EKDVKELDLT ETDDLIGALQ DIRKKLVSDM SHYPQLNVFH  180
QNYMG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-16793284MEF2 CHIMERA
6bz1_B1e-16793284MEF2 CHIMERA
6bz1_C1e-16793284MEF2 CHIMERA
6bz1_D1e-16793284MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g005170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437330.11e-138PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-48AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A178UZM52e-82A0A178UZM5_ARATH; Uncharacterized protein
TrEMBLA0MFC42e-82A0MFC4_ARATH; Uncharacterized protein (Fragment)
TrEMBLO232222e-82O23222_ARATH; MADS-box protein
STRINGXP_010437330.11e-137(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142941022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.16e-80M-type_MADS family protein
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]