PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g005140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 213aa    MW: 22910.9 Da    PI: 6.9249
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g005140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.8e-2077111135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Csa11g005140.1  77 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 111
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.90371107IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-1771123IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-1374110No hitNo description
Gene3DG3DSA:3.30.50.103.7E-1775111IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.11E-1476108No hitNo description
PfamPF003204.4E-1877111IPR000679Zinc finger, GATA-type
PROSITE patternPS00344077102IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGFSIFFSSE NDVAHHSSPY ASVDCTLSLG TPSTRLCNDD DGCRFSSHTS DALGWDFLNG  60
AKKGGGGGGN NLLSRRCANC DTTSTPLWRN GPRGPKSLCN ACGIRFKKEE RRASTVGNST  120
TGGGSTAAGV PTSDRQAGAN HYNFINRDQY ASSSPWVHQH QQNTPYNYSP ANNEYTFVGD  180
VSDVAHDVTS DPFLSWRLNV ADRTSLVHDF TM*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g005140.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0295060.0BT029506.1 Arabidopsis thaliana At4g36620 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437327.11e-157PREDICTED: GATA transcription factor 19-like
SwissprotQ6QPM21e-106GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A3P6B1R11e-113A0A3P6B1R1_BRAOL; Uncharacterized protein
STRINGXP_010437327.11e-157(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.16e-89GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]