PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g004960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 255aa    MW: 28345.7 Da    PI: 9.3146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g004960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.4e-11135225699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvfrk 99 
                     +++++ +s+++++p + a+e+g+ k++  ++t+ +++g++W+  l   k++++++++   keF  a g+k +gD +++++++  ++++  k+++k
  Csa11g004960.1 135 LKPYMIRSCQFCVPASLARENGILKAG--EVTVLNKDGEEWKSHLVNVKGRDQFYFR-SCKEFFLAIGIKnVGDPFTLEVIR-GGTSPIPKICSK 225
                     57899****************999877..7***************989999999999.89**********9********997.777789888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-6127224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-7127223IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-6129219No hitNo description
SMARTSM010199.6E-15130226IPR003340B3 DNA binding domain
PfamPF023621.1E-10134225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
PLLPFSSGVS GNATRRSHLK EITHEIKFNG RGMSSKQICK VKWSGQESFC AWRLEEFLPL  60
QRGIKAGSLC RFKLVQSGAK PVLQLCPNTS TIPEGNSSKT NKKGIVSESE GDEIETEDCS  120
ETVPMLQNKI LTLDLKPYMI RSCQFCVPAS LARENGILKA GEVTVLNKDG EEWKSHLVNV  180
KGRDQFYFRS CKEFFLAIGI KNVGDPFTLE VIRGGTSPIP KICSKVKQVS FDGYKTLERK  240
PRMTVQAPHA EDKY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g004960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107042e-31AC010704.6 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence, complete sequence.
GenBankBT0029212e-31BT002921.1 Arabidopsis thaliana clone RAFL14-83-K23 (R20184) unknown protein (At1g77580) mRNA, complete cds.
GenBankCP0026842e-31CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432841.11e-123PREDICTED: putative B3 domain-containing protein REM4 isoform X1
RefseqXP_010432842.11e-123PREDICTED: putative B3 domain-containing protein REM4 isoform X2
SwissprotQ9SB791e-101REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLR0GW331e-100R0GW33_9BRAS; Uncharacterized protein
STRINGXP_010432841.11e-122(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.11e-104B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]