PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g004810.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TALE

Protein Properties

Length: 659aa MW: 72156.8 Da PI: 6.6533

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g004810.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.6	1e-08	440	473	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yps +++ LA+++gL+ +qV++WF N R + Csa11g004810.1 440 KAMYPSDADKHLLARQTGLSRNQVSNWFINARVR 473 578*****************************88 PP
2	BELL	88.5	7.4e-29	386	442	1	57
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkai 57 +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++++g g+a pYt+lA+ka+ Csa11g004810.1 386 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIIMGQGAALPYTALAQKAM 442 589****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.6E-58	316	452	IPR006563	POX domain
Pfam	PF07526	1.0E-39	321	442	IPR006563	POX domain
SMART	SM00389	5.4E-4	430	481	IPR001356	Homeobox domain
CDD	cd00086	1.54E-9	439	478	No hit	No description
SuperFamily	SSF46689	1.09E-11	441	484	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-17	442	483	IPR009057	Homeodomain-like
Pfam	PF05920	1.2E-12	443	473	IPR008422	Homeobox KN domain
PROSITE profile	PS50071	10.916	443	477	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MGIAKTSSTT STILLKTLHN NSMSQDYHHH HQHQGGIFSF SNGFDRSDSP NLIAQQKQEH 60 QRVEEMDEES SVAEGSGIPV YETAGMLSEM FNFPGSSRGG RDLDHGQSLF RSNRQLLDDQ 120 HQNIPAMNAT DSATATAAAA MQLFLMNPPP PQQQPPTSPS STSTTRSHHN SSTLHMLLPN 180 PSTNTTDHHH SYDNNNMSMH QLPHQHHHQQ MTWQSSSSDH HHNNQTEIGT IHVENSGGRG 240 LSLSLSSSLE AAAKAEEYRN LYYGSNSSNA SSHHHHHHHH QYNQFKTLLA NSSQHHQVLN 300 QFRSSPSAAT APSSSIGAVN ILRHSRYTTP AQELLEEFCS VGRGFLKKNK LKSSSNPNTS 360 GGDGGGGSSP SSAGAMKDHP PFSASDRIEH QRRKVKLLTM LEEVDRRYNH YCEQMQMVVN 420 SFDIIMGQGA ALPYTALAQK AMYPSDADKH LLARQTGLSR NQVSNWFINA RVRLWKPMVE 480 EMYQQESKER EREEELEVNE EDQETKNSNN DKSTKSNNNE SNFTASRTTS QTPIITAPDV 540 SDADADAAVA VATGHRLRSD INAYENDPSS LLLPSSYSNA ATSSADLGSR YGGSAAFSAV 600 ATCQQGVGGF DNADMGGVNV IRFGTNPTGD VSLTLGLRHA GNMPDKDPSF CVRDFGGF*

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MGIAKTSSTT STILLKTLHN NSMSQDYHHH HQHQGGIFSF SNGFDRSDSP NLIAQQKQEH  60
QRVEEMDEES SVAEGSGIPV YETAGMLSEM FNFPGSSRGG RDLDHGQSLF RSNRQLLDDQ  120
HQNIPAMNAT DSATATAAAA MQLFLMNPPP PQQQPPTSPS STSTTRSHHN SSTLHMLLPN  180
PSTNTTDHHH SYDNNNMSMH QLPHQHHHQQ MTWQSSSSDH HHNNQTEIGT IHVENSGGRG  240
LSLSLSSSLE AAAKAEEYRN LYYGSNSSNA SSHHHHHHHH QYNQFKTLLA NSSQHHQVLN  300
QFRSSPSAAT APSSSIGAVN ILRHSRYTTP AQELLEEFCS VGRGFLKKNK LKSSSNPNTS  360
GGDGGGGSSP SSAGAMKDHP PFSASDRIEH QRRKVKLLTM LEEVDRRYNH YCEQMQMVVN  420
SFDIIMGQGA ALPYTALAQK AMYPSDADKH LLARQTGLSR NQVSNWFINA RVRLWKPMVE  480
EMYQQESKER EREEELEVNE EDQETKNSNN DKSTKSNNNE SNFTASRTTS QTPIITAPDV  540
SDADADAAVA VATGHRLRSD INAYENDPSS LLLPSSYSNA ATSSADLGSR YGGSAAFSAV  600
ATCQQGVGGF DNADMGGVNV IRFGTNPTGD VSLTLGLRHA GNMPDKDPSF CVRDFGGF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g004810.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF173816	0.0	AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
GenBank	AY050459	0.0	AY050459.1 Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010444939.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-179	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	R0GH26	0.0	R0GH26_9BRAS; Uncharacterized protein
STRING	XP_010444939.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-141	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]