PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g004410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 134aa MW: 14498.7 Da PI: 10.6935 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.9e-19 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+e Aa+a++ a +l+g Csa11g004410.1 25 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVYYLRG 74 6******99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-22 | 25 | 83 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-37 | 25 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.748 | 25 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-31 | 26 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.82E-28 | 26 | 84 | No hit | No description |
PRINTS | PR00367 | 3.2E-9 | 26 | 37 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-12 | 26 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-9 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
METATVVSTP VASAAAAATR KREKPYKGIR MRKWGKWVAE IREPNKRSRI WLGSYSTPEA 60 AARAYDTAVY YLRGPSARLN FPELLAGVTV AGGGGNSGGD MSAAFSSVYF KGQLFWGFLG 120 QLMMSMTLQL THL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 26 | 83 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g004410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232512 | 1e-86 | AC232512.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065B14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010444933.1 | 3e-69 | PREDICTED: ethylene-responsive transcription factor RAP2-10-like | ||||
Swissprot | Q9SW63 | 4e-51 | RA210_ARATH; Ethylene-responsive transcription factor RAP2-10 | ||||
TrEMBL | A0A397KWG2 | 7e-55 | A0A397KWG2_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6FQ84 | 8e-55 | A0A3P6FQ84_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4DMS6 | 6e-55 | M4DMS6_BRARP; Uncharacterized protein | ||||
STRING | XP_010444933.1 | 1e-68 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36900.1 | 5e-44 | related to AP2 10 |
Publications ? help Back to Top | |||
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