PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g003730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 24209.4 Da PI: 8.5813 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4e-18 | 61 | 115 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k Csa11g003730.1 61 RKKLRLTKQQSALLEDSFKLHSTLNPKQKQTLARQLNLRPRQVEVWFQNRRARTK 115 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.4 | 1.1e-39 | 61 | 150 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q++lLE+sF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +l Csa11g003730.1 61 RKKLRLTKQQSALLEDSFKLHSTLNPKQKQTLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-AL 150 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-17 | 50 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 57 | 117 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.21E-18 | 59 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.1E-15 | 59 | 121 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-15 | 61 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.56E-15 | 61 | 118 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 7.7E-10 | 117 | 151 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.4E-25 | 117 | 160 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MKNINPDIRV NGISSFSSGR VKREREICGG DGEEEAEETT ERVVCSRVSD DHEDEEGVSA 60 RKKLRLTKQQ SALLEDSFKL HSTLNPKQKQ TLARQLNLRP RQVEVWFQNR RARTKLKQTE 120 VDCEFLKKCC ETLTDENRRL QKELQDLKAL KLAQPFYMHM PAATLTMCPS CERLGGGGGT 180 GGAGGGTAAV DGETGKGAFS IVTKPRFYNP FTNPSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 117 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g003730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441254 | 0.0 | AJ441254.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT22. | |||
GenBank | ATU09336 | 0.0 | U09336.1 Arabidopsis thaliana clone HAT22 homeobox protein mRNA, complete cds. | |||
GenBank | AY087563 | 0.0 | AY087563.1 Arabidopsis thaliana clone 36691 mRNA, complete sequence. | |||
GenBank | BT002318 | 0.0 | BT002318.1 Arabidopsis thaliana clone C105403 putative homeobox protein HAT22 (At4g37790) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437184.1 | 1e-152 | PREDICTED: homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 1e-121 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | D7MA03 | 1e-121 | D7MA03_ARALL; Homeobox-leucine zipper protein 22 | ||||
STRING | XP_010437184.1 | 1e-152 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-117 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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