PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g001220.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 641aa MW: 71470.8 Da PI: 8.332

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g001220.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.3	7.2e-29	426	476	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e++i+le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Csa11g001220.1 426 ENDITLETLKQHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 476 789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	1.26E-5	215	332	IPR029016	GAF domain-like
Gene3D	G3DSA:3.30.450.40	7.3E-4	230	332	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.302	412	496	IPR003035	RWP-RK domain
Pfam	PF02042	6.3E-26	429	476	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MEESNNSGVV DFPKNFMDEL LWEEWWDKEN GVASSSRLKE RVTCAMRHLQ EVMGERELLI 60 QLWVPVERRS GRVLSTEEQP YSLNPFSQSQ SLALYRDASA GYSFAAEVGS DQLMGLPGRV 120 FLRRMPEWTP DVRFFRSEEY PRIGYARRYQ VRASLAVPLF QGASGNCVAV MEMVTTRRNL 180 EYASQIHTIC HALEAFDLRT SQTSSIIPAA SLKPHADDDL HTEVASILQG ICSWNGLSLA 240 ITWGHQDSST LSALISACYA ADQNSRCFLA ACSEHHLLGG QGIAGRAFAT KKQCFVTDVA 300 IFSKWSYPLS HYAKMLDLHA ALAVPLLTRR NRTVQFVLEF FFPRDCLDIQ TQRLTLVSQL 360 NQRFQSSPHL MVDDQLAEDV RDTATPLTDH SSRSAQEEAT DPKGKSLSFS SSSSSLESRK 420 RKTRAENDIT LETLKQHFAG SLKDAAKNIG VCPTTLKRIC RQHGISRWPS RKIKKVGHSL 480 RKLQVVMDSV EGVQGSLHLA SFYSSFPQLQ SSSFPLINPN QTVHVPPPKS PPSLSGSHSS 540 SGSSTCCSSE EQQLSGFQKP ALSHPQLLTL SSLQEDQRPA RVTSSLPPLP SATASRKAKD 600 GMKVKAMFRD SMLRMCLQPH SRLTDXFFFF LLGEPETQDK G

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MEESNNSGVV DFPKNFMDEL LWEEWWDKEN GVASSSRLKE RVTCAMRHLQ EVMGERELLI  60
QLWVPVERRS GRVLSTEEQP YSLNPFSQSQ SLALYRDASA GYSFAAEVGS DQLMGLPGRV  120
FLRRMPEWTP DVRFFRSEEY PRIGYARRYQ VRASLAVPLF QGASGNCVAV MEMVTTRRNL  180
EYASQIHTIC HALEAFDLRT SQTSSIIPAA SLKPHADDDL HTEVASILQG ICSWNGLSLA  240
ITWGHQDSST LSALISACYA ADQNSRCFLA ACSEHHLLGG QGIAGRAFAT KKQCFVTDVA  300
IFSKWSYPLS HYAKMLDLHA ALAVPLLTRR NRTVQFVLEF FFPRDCLDIQ TQRLTLVSQL  360
NQRFQSSPHL MVDDQLAEDV RDTATPLTDH SSRSAQEEAT DPKGKSLSFS SSSSSLESRK  420
RKTRAENDIT LETLKQHFAG SLKDAAKNIG VCPTTLKRIC RQHGISRWPS RKIKKVGHSL  480
RKLQVVMDSV EGVQGSLHLA SFYSSFPQLQ SSSFPLINPN QTVHVPPPKS PPSLSGSHSS  540
SGSSTCCSSE EQQLSGFQKP ALSHPQLLTL SSLQEDQRPA RVTSSLPPLP SATASRKAKD  600
GMKVKAMFRD SMLRMCLQPH SRLTDXFFFF LLGEPETQDK G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	417	422	SRKRKT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g001220.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrate. {ECO:0000269\|PubMed:15375205}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069558	1e-179	AC069558.5 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence.
GenBank	AL035538	1e-179	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL035539	1e-179	AL035539.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project).
GenBank	AL161593	1e-179	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	CP002687	1e-179	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010436926.1	0.0	PREDICTED: protein NLP3-like
Swissprot	Q9SVF1	0.0	NLP3_ARATH; Protein NLP3
TrEMBL	R0F7T3	0.0	R0F7T3_9BRAS; Uncharacterized protein
STRING	XP_010436926.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15287	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	0.0	Nin-like family protein

Publications ? help Back to Top
Doidy J, et al. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062]